1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...attagcagtggattacttgctagtctgttattagtggtcaagtttatattccagacagttttcatggtgagttgatctactggtgtctgctccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTTCAGCAG
species | Physcomitrella patens |
transcript | PP1S29_256V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|162169757|gb|FC345294.1|FC345294
genomic: TTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|37845305|gb|BJ603313.1|BJ603313
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|18327390|gb|BJ159392.1|BJ159392
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|162182768|gb|FC359515.1|FC359515
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|67720249|gb|BJ970508.1|BJ970508
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|67727192|gb|BJ977451.1|BJ977451
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|162176348|gb|FC353533.1|FC353533
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: TCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|18334218|gb|BJ166234.1|BJ166234
genomic: TCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|67726751|gb|BJ977010.1|BJ977010
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|162171617|gb|FC347558.1|FC347558
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|162181163|gb|FC357608.1|FC357608
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|37824766|gb|BJ582832.1|BJ582832
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|18335658|gb|BJ167678.1|BJ167678
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|67727852|gb|BJ978111.1|BJ978111
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGTCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|162223700|gb|FC399772.1|FC399772
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|19789330|gb|BQ041244.1|BQ041244
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|162176594|gb|FC353063.1|FC353063
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|162223699|gb|FC399771.1|FC399771
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|162182767|gb|FC359514.1|FC359514
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|162167231|gb|FC342796.1|FC342796
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|18333553|gb|BJ165568.1|BJ165568
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|67725967|gb|BJ976226.1|BJ976226
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCCCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|67720690|gb|BJ970949.1|BJ970949
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|208375034|gb|DC944815.1|DC944815
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|67720235|gb|BJ970494.1|BJ970494
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTEST: gi|162241271|gb|FC416902.1|FC416902
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
EST: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGT GTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGGTAACACCATT
genomic: ATGGTGGAGGAATGAGCTCTGCCAAGGCTGCACTTGAGAGTGACACACGTgtaagttttt ... tccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATT
atattccagacagttttcatggtgagttgatctactggtgtctgctccttatcagGTGCTTGCATTCGAGGCTGGCAGGAAGTATGGCATTCGGGTTAACACCATTTCAGCAG
agttgat putative branch site (score: 16)
tctgctcctt putative PPT
ttttcat TA-rich tract