1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagagatgtgggcagtttggagtggagagttgtgggggtggtgcgtgtgggtttgtggggttggggacgacgatgacgctgagacggtgtttgtggtgtggtgtgtggtgggtggtgtgtgcgtgcagGTTGTGGAGATCATTCCATCAGCTCTTGTTCTGTTTATTTTGCGGAAGTTGCCACCGAAGCGGCCGCCTGGGCAGTACCATCCGATCCGGTGAAGAAGGG
species | Physcomitrella patens |
transcript | PP1S295_28V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGGATTTGGACGTTCTGTACCATCCAATCTTGAACGGCATATACTACACG GTTGTGGAGATCATTCCATCAGCTCTTGTTCTGTTTATTTTGCGGAAGTTGEST: gi|208392783|gb|DC953680.1|DC953680
genomic: TGGATTTGGACGTTCTGTACCATCCAATCTTGAACGGCATATACTACACGgtaagagatg ... gtgcgtgcagGTTGTGGAGATCATTCCATCAGCTCTTGTTCTGTTTATTTTGCGGAAGTTG
EST: TGGATTTGGACGTTCTGTACCATCCAATCTTGAACGGCATATACTACACG GTTGTGGAGATCATTCCATCAGCTCTTGTTCTGTTTATTTTGCGGAAGTTGEST: gi|67724795|gb|BJ975054.1|BJ975054
genomic: TGGATTTGGACGTTCTGTACCATCCAATCTTGAACGGCATATACTACACGgtaagagatg ... gtgcgtgcagGTTGTGGAGATCATTCCATCAGCTCTTGTTCTGTTTATTTTGCGGAAGTTG
EST: TGGATTTGGACGTTCTGTACCATCCAATCTTGAACGGCATATACTACACG GTTGTGGAGATCATTCCATCAGCTCTTGTTCTGTTTATTTTGCGGAAGTTG
genomic: TGGATTTGGACGTTCTGTACCATCCAATCTTGAACGGCATATACTACACGgtaagagatg ... gtgcgtgcagGTTGTGGAGATCATTCCATCAGCTCTTGTTCTGTTTATTTTGCGGAAGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagatgtgggcagtttggagtggagagttgtgggggtggtgcgtgtgggtttgtggggttggggacgacgatgacgctgagacggtgtttgtggtgtggtgtgtggtgggtggtgtgtgcgtgcagGTTGTGGAGATCATTCCATCAGCTCTTGTTCTGTTTATTTTGCGGAAGTTGCCACCGAAGCGGCCGCCTGGGCAGTACCATCCGATCCGGTGAAGAAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG