Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgctaaattttaaggctaaatgtattcgatgttacaataacattaccttgggatgatatgttaatctctttctaattttcaattcttatgttccttgcagTCAACAAGATGGCTTCTATACACTGAACAGGCGCCTTCGGCTTGGTTTCATTTTGCTCTTTGTGGGCTGGTTGGTATTATTACTGCATACGCTTTTGTTT

Basic information

species Physcomitrella patens
transcript PP1S28_200V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100386777|gb|BY970318.1|BY970318
EST:     AGAAGGGTTACTCTGTGACACTCTTCTTGGCTGTGCTAGCTTTCGGTGGA                         TCAACAAGATGGCTTCTATACACTGAACAGGCGCCTTCGGCTTGGTTTCAT
genomic: AGAAGGGTTACTCTGTGACACTCTTCTTGGCTGTGCTAGCTTTCGGTGGAgtaagtattt ... ttccttgcagTCAACAAGATGGCTTCTATACACTGAACAGGCGCCTTCGGCTTGGTTTCAT
EST: gi|162255699|gb|FC432113.1|FC432113
EST:     AGAAGGGTTACTCTGTGACACTCTTCTTGGCTGTGCTAGCTTTCGGTGGA                         TCAACAAGATGGCTTCTATACACTGAACAGGCGCCTTCGGCTTGGTTTCAT
genomic: AGAAGGGTTACTCTGTGACACTCTTCTTGGCTGTGCTAGCTTTCGGTGGAgtaagtattt ... ttccttgcagTCAACAAGATGGCTTCTATACACTGAACAGGCGCCTTCGGCTTGGTTTCAT
EST: gi|162164625|gb|FC341920.1|FC341920
EST:     AGAAGGGTTACTCTGTGACACTCTTCTTGGCTGTGCTAGCTTTCGGTGGA                         TCAACAAGATGGCTTCTATACACTGAACAGGCGCCTTCGGCTTGGTTTCAT
genomic: AGAAGGGTTACTCTGTGACACTCTTCTTGGCTGTGCTAGCTTTCGGTGGAgtaagtattt ... ttccttgcagTCAACAAGATGGCTTCTATACACTGAACAGGCGCCTTCGGCTTGGTTTCAT
EST: gi|100387951|gb|BY970696.1|BY970696
EST:     AGAAGGGTTACTCTGTGACACTCTTCTTGGCTGTGCTAGCTTTCGGTGGA                         TCAACAAGATGGCTTCTATACACTGAACAGGCGCCTTCGGCTTGGTTTCAT
genomic: AGAAGGGTTACTCTGTGACACTCTTCTTGGCTGTGCTAGCTTTCGGTGGAgtaagtattt ... ttccttgcagTCAACAAGATGGCTTCTATACACTGAACAGGCGCCTTCGGCTTGGTTTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgggatgatatgttaatctctttctaattttcaattcttatgttccttgcagTCAACAAGATGGCTTCTATACACTGAACAGGCGCCTTCGGCTTGGTTTCATTTTGCTCTTTGTGGGCTGGTTGGTATTATTACTGCATACGCTTTTGTTT
                        ttctaat  putative branch site (score: 2)
                                     ttcttatgttcctt  putative PPT
                       tttctaattttcaatt  TA-rich tract