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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcatttctgtgattttctccttaccctagattttgtcagcgagaaaattcaatccgattctcaattaagaagcaaaaatatttcttaaatttcgattatccttgtgtgaagcagCAATATCGAAAACAACAACTTCACAGGTTATCTTCCATCGAATTTTCGCCCCCAAACTTACAA

Basic information

species Physcomitrella patens
transcript PP1S284_52V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100408711|gb|BY974249.1|BY974249
EST:     AGTGGCCAACTACCAGCATCTTTGGTTCAGCTAAAACACTTGCAAACTTT                         CAATATCGAAAACAACAACTTCACAGGTTATCTTCCATCGAATTTTCGCCC
genomic: AGTGGCCAACTACCAGCATCTTTGGTTCAGCTAAAACACTTGCAAACTTTgtaagtcatt ... tgtgaagcagCAATATCGAAAACAACAACTTCACAGGTTATCTTCCATCGAATTTTCGCCC
EST: gi|100449007|gb|CJ973306.1|CJ973306
EST:     AGTGGCCAACTACCAGCATCTTTGGTTCAGCTAAAACACTTGCAAACTTT                         CAATATCGAAAACAACAACTTCACAGGTTATCTTCCATCGAATTTTCGCCC
genomic: AGTGGCCAACTACCAGCATCTTTGGTTCAGCTAAAACACTTGCAAACTTTgtaagtcatt ... tgtgaagcagCAATATCGAAAACAACAACTTCACAGGTTATCTTCCATCGAATTTTCGCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaattaagaagcaaaaatatttcttaaatttcgattatccttgtgtgaagcagCAATATCGAAAACAACAACTTCACAGGTTATCTTCCATCGAATTTTCGCCCCCAAACTTACAA
                                       tccttgt  CT-rich tract
     ttaagaagcaaaaata  TA-rich tract