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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtccattgaatgagctacatctgctttaattttctgtcaagtttgtgcagtatcttacaaatatatggcattgctctaaagtaacctgatcttttgtttggacgattgtaaatttttctgtgtgttgctgcgaatgctttacagacgatttttgtgtggattgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACCCTGTAGTACGGATTGTTTCTGTAGGAACGGGAATATTTAGGGTGGTGAG

Basic information

species Physcomitrella patens
transcript PP1S276_75V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162178480|gb|FC354204.1|FC354204
EST:     GATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|37847188|gb|BJ605196.1|BJ605196
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162176319|gb|FC353504.1|FC353504
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATG
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATG
EST: gi|162270365|gb|FC447065.1|FC447065
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162162998|gb|FC338388.1|FC338388
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162157273|gb|FC332907.1|FC332907
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162178479|gb|FC354203.1|FC354203
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|67692782|gb|BJ953015.1|BJ953015
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162169599|gb|FC345539.1|FC345539
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|37828443|gb|BJ586455.1|BJ586455
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162249948|gb|FC427049.1|FC427049
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|37822400|gb|BJ580466.1|BJ580466
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162198619|gb|FC374778.1|FC374778
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|18340196|gb|BJ172224.1|BJ172224
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162192274|gb|FC367799.1|FC367799
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162176318|gb|FC353503.1|FC353503
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|37832140|gb|BJ590152.1|BJ590152
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|37823462|gb|BJ581528.1|BJ581528
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162170395|gb|FC346787.1|FC346787
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162179963|gb|FC356034.1|FC356034
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162153111|gb|FC329517.1|FC329517
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162191286|gb|FC366860.1|FC366860
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|18338788|gb|BJ170813.1|BJ170813
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162191910|gb|FC366915.1|FC366915
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|37823879|gb|BJ581945.1|BJ581945
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162153112|gb|FC329518.1|FC329518
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162186624|gb|FC363596.1|FC363596
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162185157|gb|FC362291.1|FC362291
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162169600|gb|FC345540.1|FC345540
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162160104|gb|FC335974.1|FC335974
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162192275|gb|FC367800.1|FC367800
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|208395400|gb|DC924468.1|DC924468
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162187014|gb|FC363420.1|FC363420
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|67575827|gb|BJ948651.1|BJ948651
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|67694684|gb|BJ954917.1|BJ954917
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162190349|gb|FC365363.1|FC365363
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162190350|gb|FC365364.1|FC365364
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|6167516|gb|AW145780.1|AW145780
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|37832053|gb|BJ590065.1|BJ590065
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|37835833|gb|BJ593845.1|BJ593845
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|162150107|gb|FC326820.1|FC326820
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
EST: gi|37850696|gb|BJ608704.1|BJ608704
EST:     AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAG                         GCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC
genomic: AATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 5

GCCGCCTCAGTAGCCAAGATTTTCTTGACCTCCGATGTAGTAGTGACGGAAATCAAAGAACCAGAGCCTGTTCCAGCTGGCAACCCCATGGATGCATCAGgtgcgtccat ... attgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACCCTGTAGTACGGATTGTTTCTGTAGGAACGGGAATATTTAGGGTGGTGAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctgtgtgttgctgcgaatgctttacagacgatttttgtgtggattgatgcagGCTATGGTTACTGAAGAATGAGATTACCTAATATTTTTGCGATGCTCGACCCTGTAGTACGGATTGTTTCTGTAGGAACGGGAATATTTAGGGTGGTGAG
                                            gattgat  putative branch site (score: 5)
                                 atttttgt  TA-rich tract