1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttatgaaaaatggtgtttgcatttgctaattgctgaatcgatttcctatgcctgcttgctttttcttcaaattcactgagtattctgcttatgtttacagACGAAGAAAAGCGAGTTAATGCTACTTACATCATCAGTATCGCACGAAAGCTGGGATGCTCGGTTTTCCTTTTGTGGGACGATATTGTTGAG
species | Physcomitrella patens |
transcript | PP1S271_37V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGTAGAGCCGCGAGTAGTGAACTGGACTTTGGTGACCAGGGGAGTGACAG ACGAAGAAAAGCGAGTTAATGCTACTTACATCATCAGTATCGCACGAAAGCEST: gi|18340764|gb|BJ172795.1|BJ172795
genomic: AGTAGAGCCGCGAGTAGTGAACTGGACTTTGGTGACCAGGGGAGTGACAGgtgacttact ... atgtttacagACGAAGAAAAGCGAGTTAATGCTACTTACATCATCAGTATCGCACGAAAGC
EST: AGTAGAGCCGCGAGTAGTGAACTGGACTTTGGTGACCAGGGGAGTGACAG ACGAAGAAAAGCGAGTTAATGCTACTTACATCATCAGTATCGCACGAAAGCEST: gi|208365862|gb|DC951069.1|DC951069
genomic: AGTAGAGCCGCGAGTAGTGAACTGGACTTTGGTGACCAGGGGAGTGACAGgtgacttact ... atgtttacagACGAAGAAAAGCGAGTTAATGCTACTTACATCATCAGTATCGCACGAAAGC
EST: AGTAGAGCCGCGAGTAGTGAACTGGACTTTGGTGACCAGGGGAGTGACAG ACGAAGAAAAGCGAGTTAATGCTACTTACATCATCAGTATCGCACGAAAGC
genomic: AGTAGAGCCGCGAGTAGTGAACTGGACTTTGGTGACCAGGGGAGTGACAGgtgacttact ... atgtttacagACGAAGAAAAGCGAGTTAATGCTACTTACATCATCAGTATCGCACGAAAGC
ctatgcctgcttgctttttcttcaaattcactgagtattctgcttatgtttacagACGAAGAAAAGCGAGTTAATGCTACTTACATCATCAGTATCGCACGAAAGCTGGGATGCTCGGTTTTCCTTTTGTGGGACGATATTGTTGAG
tttttcttcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatgaaaaatggtgtttgcatttgctaattgctgaatcgatttcctatgcctgcttgctttttcttcaaattcactgagtattctgcttatgtttacagACGAAGAAAAGCGAGTTAATGCTACTTACATCATCAGTATCGCACGAAAGCTGGGATGCTCGGTTTTCCTTTTGTGGGACGATATTGTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - tgctgaa