1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaataataactttgcagattattagttacgcaaatctgagctgttgtattgcaagcctatccatatctattagcaagactttcgtatgtgaaaactttctaatagtgatctaattttttgcagTACAAACGATGTCCAGTTACTCTTGCTCCCACAGCGACCAACCAAATTCTGCGACTGTATCAAGATGATTAATAGCAAGGTAGACAATCTCATTGCAGTC
species | Physcomitrella patens |
transcript | PP1S26_47V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CGTCCGGCTTTGTCTTCTGTTATACATGTGCTTTTCACTATGTCACTCAG TACAAACGATGTCCAGTTACTCTTGCTCCCACAGCGACCAACCAAATTCTGEST: gi|208369313|gb|DC955858.1|DC955858
genomic: CGTCCGGCTTTGTCTTCTGTTATACATGTGCTTTTCACTATGTCACTCAGgtaataataa ... ttttttgcagTACAAACGATGTCCAGTTACTCTTGCTCCCACAGCGACCAACCAAATTCTG
EST: CGTCCGGCTTTGTCTTCTGTTATACATGTGCTTTTCACTATGTCACTCAG TACAAACGATGTCCAGTTACTCTTGCTCCCACAGCGACCAACCAAATTCTG
genomic: CGTCCGGCTTTGTCTTCTGTTATACATGTGCTTTTCACTATGTCACTCAGgtaataataa ... ttttttgcagTACAAACGATGTCCAGTTACTCTTGCTCCCACAGCGACCAACCAAATTCTG
attagcaagactttcgtatgtgaaaactttctaatagtgatctaattttttgcagTACAAACGATGTCCAGTTACTCTTGCTCCCACAGCGACCAACCAAATTCTGCGACTGTATCAAGATGATTAATAGCAAGGTAGACAATCTCATTGCAGTC
ttttttgc CT-rich tract
aaaactttctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataataactttgcagattattagttacgcaaatctgagctgttgtattgcaagcctatccatatctattagcaagactttcgtatgtgaaaactttctaatagtgatctaattttttgcagTACAAACGATGTCCAGTTACTCTTGCTCCCACAGCGACCAACCAAATTCTGCGACTGTATCAAGATGATTAATAGCAAGGTAGACAATCTCATTGCAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG