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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgctaaacaaccaagaccctgtcaatcttcagaacctaagttagactgtgaatggtgcagcgcatgttgtggatgagtgctgcttgtacctggatttatttttttgctcgaatgagactttgtacttctaatggtttttgtgtaatttttttgtaatttttgtgtaattttgtggaatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTTGACGCATGAAATCCGCGCCATCTGGATCTCCTACATGTCTCAG

Basic information

species Physcomitrella patens
transcript PP1S259_126V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208362855|gb|DC950805.1|DC950805
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208365873|gb|DC947755.1|DC947755
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208354504|gb|DC953868.1|DC953868
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208386860|gb|DC953513.1|DC953513
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208371335|gb|DC944499.1|DC944499
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208368949|gb|DC955034.1|DC955034
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208375077|gb|DC956445.1|DC956445
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208371762|gb|DC951796.1|DC951796
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208355378|gb|DC949858.1|DC949858
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208362144|gb|DC954311.1|DC954311
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|67720675|gb|BJ970934.1|BJ970934
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208351103|gb|DC921349.1|DC921349
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCANGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|67720645|gb|BJ970904.1|BJ970904
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208358571|gb|DC946532.1|DC946532
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|67725270|gb|BJ975529.1|BJ975529
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208373640|gb|DC952465.1|DC952465
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208366254|gb|DC943814.1|DC943814
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208367547|gb|DC955699.1|DC955699
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208353738|gb|DC949772.1|DC949772
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208361562|gb|DC950292.1|DC950292
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208389599|gb|DC945823.1|DC945823
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208387246|gb|DC945545.1|DC945545
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|67723866|gb|BJ974125.1|BJ974125
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208391971|gb|DC949434.1|DC949434
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208382500|gb|DC923170.1|DC923170
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208353564|gb|DC946344.1|DC946344
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|37824503|gb|BJ582569.1|BJ582569
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208358965|gb|DC950142.1|DC950142
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|67724238|gb|BJ974497.1|BJ974497
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208369883|gb|DC944249.1|DC944249
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208381292|gb|DC919182.1|DC919182
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208392829|gb|DC957096.1|DC957096
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|67724236|gb|BJ974495.1|BJ974495
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAAAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208360610|gb|DC957849.1|DC957849
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208359304|gb|DC954199.1|DC954199
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208362640|gb|DC943783.1|DC943783
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208388440|gb|DC957050.1|DC957050
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208400316|gb|DC924954.1|DC924954
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|67726169|gb|BJ976428.1|BJ976428
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208369501|gb|DC931697.1|DC931697
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCA-GGNT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208369250|gb|DC944567.1|DC944567
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208346009|gb|DC921254.1|DC921254
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|67703874|gb|BJ964107.1|BJ964107
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGT
EST: gi|208368881|gb|DC947439.1|DC947439
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|67720132|gb|BJ970391.1|BJ970391
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208394053|gb|DC957134.1|DC957134
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208356029|gb|DC946203.1|DC946203
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208372589|gb|DC944596.1|DC944596
EST:     AACAACTTCATCCAGCCCGGCANTCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCNGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|67726447|gb|BJ976706.1|BJ976706
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208391916|gb|DC949379.1|DC949379
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208372250|gb|DC948053.1|DC948053
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208366641|gb|DC955661.1|DC955661
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208368096|gb|DC947656.1|DC947656
EST:     ANCAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|67728284|gb|BJ978543.1|BJ978543
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208362514|gb|DC943741.1|DC943741
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|37830045|gb|BJ588057.1|BJ588057
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208369879|gb|DC944245.1|DC944245
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208361228|gb|DC957697.1|DC957697
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208349007|gb|DC921695.1|DC921695
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208353341|gb|DC946289.1|DC946289
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208361060|gb|DC946693.1|DC946693
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208397218|gb|DC920861.1|DC920861
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208365847|gb|DC955450.1|DC955450
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208396763|gb|DC924347.1|DC924347
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|67726352|gb|BJ976611.1|BJ976611
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208386921|gb|DC956918.1|DC956918
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|67725837|gb|BJ976096.1|BJ976096
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|67728022|gb|BJ978281.1|BJ978281
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|67727088|gb|BJ977347.1|BJ977347
EST:     AACAACTTCATCCAGCCCGGCAATCGCTNCCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTNTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208365798|gb|DC947736.1|DC947736
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|37824007|gb|BJ582073.1|BJ582073
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|67728208|gb|BJ978467.1|BJ978467
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208394129|gb|DC957210.1|DC957210
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|67725278|gb|BJ975537.1|BJ975537
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|37837585|gb|BJ595593.1|BJ595593
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208377437|gb|DC927083.1|DC927083
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208368387|gb|DC955556.1|DC955556
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208364353|gb|DC950654.1|DC950654
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
EST: gi|208360763|gb|DC946473.1|DC946473
EST:     AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAG                         GCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT
genomic: AACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 37

ACGGTTATTCCTAAGGAGAACAACTTCATCCAGCCCGGCAATCGCTACCGCACTTGGGACCACGACAGgtttgctaaa ... aatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTTGACGCATGAAATCCGCGCCATCTGGATCTCCTACATGTCTCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggtttttgtgtaatttttttgtaatttttgtgtaattttgtggaatgcaacagGCAGGAGAGATTCATCGGCAGAATGGTTACTGCTCTGAGTGATCCAAGGTTGACGCATGAAATCCGCGCCATCTGGATCTCCTACATGTCTCAG
 ttctaat  putative branch site (score: 37)
     ttttgtgtaatttttt  TA-rich tract