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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatatatgtattccatctttctctagttgggaaaaatgcggactagaatctgggtgtatttcttagcagaattttattaagtgcataggtttgagaaagggtgtaatgcacgagcatcctcattgacatgtttcttttgtttgatgttcgacactttgacacagAATATCTTGGTGGTTTCCAAATATTACTCGAGAATCACCTTGACGAGGCTTTCAGAACTGTTGTGCCTCAGCCTCCAG

Basic information

species Physcomitrella patens
transcript PP1S257_89V6.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18334443|gb|BJ166460.1|BJ166460
EST:     CGCTTGGAGAGCGGGCAGCTGAAGACCTTCGTCAGCGAGTTATTGAACAT                         AATATCTTGGTAGTTTCCAAATATTACTCGAGAATCACCTTGACGAGGCTT
genomic: CGCTTGGAGAGCGGGCAGCTGAAGACCTTCGTCAGCGAGTTATTGAACATgtaaatatat ... tttgacacagAATATCTTGGTGGTTTCCAAATATTACTCGAGAATCACCTTGACGAGGCTT
EST: gi|162160423|gb|FC337424.1|FC337424
EST:     CGCTTGGAGAGCGGGCAGCTGAAGACCTTCGTCAGCGAGTTATTGAACAT                         AATATCTTGGTGGTTTCCAAATATTACTCGAGAATCACCTTGACGAGGCTT
genomic: CGCTTGGAGAGCGGGCAGCTGAAGACCTTCGTCAGCGAGTTATTGAACATgtaaatatat ... tttgacacagAATATCTTGGTGGTTTCCAAATATTACTCGAGAATCACCTTGACGAGGCTT
EST: gi|208395944|gb|DC915704.1|DC915704
EST:     CGCTTGGAGAGCGGGCAGCTGAAGACCTTCGTCAGCGAGTTATTGAACAT                         AATATCTTGGTGGTTTCCAAATATTACTCGAGAATCACCTTGACGAGGCTT
genomic: CGCTTGGAGAGCGGGCAGCTGAAGACCTTCGTCAGCGAGTTATTGAACATgtaaatatat ... tttgacacagAATATCTTGGTGGTTTCCAAATATTACTCGAGAATCACCTTGACGAGGCTT
EST: gi|18334715|gb|BJ166732.1|BJ166732
EST:     CGCTTGGAGAGCGGGCAGCTGAAGACCTTCGTCAGCGAGTTATTGAACAT                         AATATCTTGGTAGTTTCCAAATATTACTCGAGAATCACCTTGACGAGGCTT
genomic: CGCTTGGAGAGCGGGCAGCTGAAGACCTTCGTCAGCGAGTTATTGAACATgtaaatatat ... tttgacacagAATATCTTGGTGGTTTCCAAATATTACTCGAGAATCACCTTGACGAGGCTT
EST: gi|162160422|gb|FC337423.1|FC337423
EST:     CGCTTGGAGAGCGGGCAGCTGAAGACCTTCGTCAGCGAGTTATTGAACAT                         AATATCTTGGTGGTTTCCAAATATTACTCGAGAATCACCTTGACGAGGCTT
genomic: CGCTTGGAGAGCGGGCAGCTGAAGACCTTCGTCAGCGAGTTATTGAACATgtaaatatat ... tttgacacagAATATCTTGGTGGTTTCCAAATATTACTCGAGAATCACCTTGACGAGGCTT
EST: gi|162261867|gb|FC438391.1|FC438391
EST:     CGCTTGGAGAGCGGGCAGCTGAAGACCTTCGTCAGCGAGTTATTGAACAT                         AATATCTTGGTGGTTTCCAAATATTACTCGAGAATCACCTTGACGAGGCTT
genomic: CGCTTGGAGAGCGGGCAGCTGAAGACCTTCGTCAGCGAGTTATTGAACATgtaaatatat ... tttgacacagAATATCTTGGTGGTTTCCAAATATTACTCGAGAATCACCTTGACGAGGCTT
EST: gi|37848402|gb|BJ606410.1|BJ606410
EST:     CGCTTGGAGAGCGGGCAGCTGAAGACNTTCGTCAGCGAGTTATTGAACAT                         AATATCTTGGTGGTTTCCAAATATTACTCGAGAATCACCTTGACGAGGCTT
genomic: CGCTTGGAGAGCGGGCAGCTGAAGACCTTCGTCAGCGAGTTATTGAACATgtaaatatat ... tttgacacagAATATCTTGGTGGTTTCCAAATATTACTCGAGAATCACCTTGACGAGGCTT
EST: gi|37848391|gb|BJ606399.1|BJ606399
EST:     CGCTTGGAGAGCGGGCAGCTGAAGACNTTCGTCAGCGAGTTATTGAACAT                         AATATCTTGGTGGTTTCCAAATATTACTCGAGAATCACCTTGACGAGGCTT
genomic: CGCTTGGAGAGCGGGCAGCTGAAGACCTTCGTCAGCGAGTTATTGAACATgtaaatatat ... tttgacacagAATATCTTGGTGGTTTCCAAATATTACTCGAGAATCACCTTGACGAGGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgagcatcctcattgacatgtttcttttgtttgatgttcgacactttgacacagAATATCTTGGTGGTTTCCAAATATTACTCGAGAATCACCTTGACGAGGCTTTCAGAACTGTTGTGCCTCAGCCTCCAG
                     tttctttt  TA-rich tract