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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtcgttaattatatgatttatttttgtaatttctctatgatcaaggagagtggattctatgaattaatagtaccaaatatgtcttattttgttagcaaggtgtatccattcagagaagcacgcagttctcagcacatttcactttgattaaaatcaagaagtgattgaatgactgcagGAGCTTACTTGGCTTGTTCTTTCCTGCGGTCACCGGAATCATGGCGGGATCTAATCGATCTGGTTCACTCAAGGACACTCAACGTTCCATACCAAGGGGG

Basic information

species Physcomitrella patens
transcript PP1S22_329V6.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S22_329V6.1 (Physcomitrella patens), 3'ss of exon 9
lower sequence: LOC_Os01g19850.1 (Oryza sativa), 3'ss of exon 8
gtacgtcgttaattatatgatttatttttgtaatttctctatgatcaaggagagtggattctatgaattaatagtaccaaatatgtcttattttgttagcaaggtgtatccattcagagaagcacgcagttctcagcacatttcactttgattaaaatcaagaagtgattgaatgactgcagGAGCTTACTTGGCTTGTTCTTTCCTGCGGTCACCGGAATCATGGCGGGATCTAATCGATCTGGTTCACTCAAGGACACTCAACGTTCCATACCAAGGGGG
    |||  ||  |      ||||  | |||  |   | | |  |    || | | | || || ||     || |  |    |  | | ||||  |       ||  || ||         | | ||| ||   | ||   ||   |||| |                         | |||    ||  | ||  | | ||| || || || || ||||||||||| || || ||||| |||| |||||| || ||||| |||||||| |||||||  || 
----gtctatatattgggattttaagtctgtcctccttttgttgtt---gatacttgtttttaagatcctctaattacttgcaattttcattt-atcgattttgtagattca---------gtatgcacttgctaacattctttgttttgttc-----------------------tttcagTGCTTTGTTAGGTCTCTACTTCCCAGCAGTTACAGGAATCATGGCTGGTTCAAATCGGTCTGCTTCACTGAAAGACACACAACGTTCAATACCAATTGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162258026|gb|FC434120.1|FC434120
EST:     ACGAATGATGCAGGAATACCTGCTCGTACTGGTTACTATTGGGATTTTGA                         GAGCTTACTTGGCTTGTTCTTTCCTGCGGTCACCGGAATCATGGCGGGATC
genomic: ACGAATGATGCAGGAATACCTGCTCGTACTGGTTACTATTGGGATTTTGAgtacgtcgtt ... atgactgcagGAGCTTACTTGGCTTGTTCTTTCCTGCGGTCACCGGAATCATGGCGGGATC
EST: gi|162256927|gb|FC433029.1|FC433029
EST:     ACGAATGATGCAGGAATACCTGCTCGTACTGGTTACTATTGGGATTTTGA                         GAGCTTACTTGGCTTGTTCTTTCCTGCGGTCACCGGAATCATGGCGGGATC
genomic: ACGAATGATGCAGGAATACCTGCTCGTACTGGTTACTATTGGGATTTTGAgtacgtcgtt ... atgactgcagGAGCTTACTTGGCTTGTTCTTTCCTGCGGTCACCGGAATCATGGCGGGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttctcagcacatttcactttgattaaaatcaagaagtgattgaatgactgcagGAGCTTACTTGGCTTGTTCTTTCCTGCGGTCACCGGAATCATGGCGGGATCTAATCGATCTGGTTCACTCAAGGACACTCAACGTTCCATACCAAGGGGG
                  ctttgat  putative branch site (score: 5)
                   tttgattaaaatcaa  TA-rich tract