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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggctatcaaagtctaagatgttgactaggaaatgagtgtattagatctttttagtgctaggaaagtttctttttttcaacctcccaatcgtcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG

Basic information

species Physcomitrella patens
transcript PP1S227_66V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7207714|gb|AW561711.1|AW561711
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|208386457|gb|DC949130.1|DC949130
EST:     GG-AAAACCTCAAAACCGTATCAAG-TTTCACTAGNGA-NGAAACGCCAG                         CTT-TTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162179912|gb|FC355983.1|FC355983
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162198076|gb|FC372103.1|FC372103
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|100388195|gb|BY951797.1|BY951797
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162190641|gb|FC367527.1|FC367527
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162213332|gb|FC389620.1|FC389620
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162278617|gb|FC455015.1|FC455015
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|7286764|gb|AW599251.1|AW599251
EST:     GGAAAAACCTCANAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATNTGACGTCTCANAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|37839307|gb|BJ597315.1|BJ597315
EST:     TTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCNTCTTGTAGC
genomic: TTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162262853|gb|FC439272.1|FC439272
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162243292|gb|FC415641.1|FC415641
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162243293|gb|FC415642.1|FC415642
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|208376475|gb|DC918920.1|DC918920
EST:     GG-AAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162213331|gb|FC389619.1|FC389619
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162261368|gb|FC437801.1|FC437801
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162261369|gb|FC437802.1|FC437802
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|208365347|gb|DC950790.1|DC950790
EST:     NAAAAACCTCNAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: -AAAAACCTC-AAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|67725705|gb|BJ975964.1|BJ975964
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162172981|gb|FC347891.1|FC347891
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162262854|gb|FC439273.1|FC439273
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162237332|gb|FC412440.1|FC412440
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162159195|gb|FC334366.1|FC334366
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|37847506|gb|BJ605514.1|BJ605514
EST:     CGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGGATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: CGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162267272|gb|FC442060.1|FC442060
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162222837|gb|FC399299.1|FC399299
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162267271|gb|FC442059.1|FC442059
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|100410814|gb|BY956200.1|BY956200
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAG
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAG
EST: gi|37841983|gb|BJ599991.1|BJ599991
EST:     TTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: TTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|37826305|gb|BJ584317.1|BJ584317
EST:     AAGTTTTCACTAGTGATGGAAACGCCAG                         CTTNTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: AAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162190640|gb|FC367526.1|FC367526
EST:     AAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: AAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|208382289|gb|DC919277.1|DC919277
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTNTGGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162258437|gb|FC434444.1|FC434444
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|67727259|gb|BJ977518.1|BJ977518
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162159194|gb|FC334365.1|FC334365
EST:     AAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: AAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|19778198|gb|BQ039280.1|BQ039280
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162222838|gb|FC399300.1|FC399300
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCANAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162158368|gb|FC334163.1|FC334163
EST:     CGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: CGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|18335837|gb|BJ167858.1|BJ167858
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|19782687|gb|BQ039891.1|BQ039891
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|37853540|gb|BJ611548.1|BJ611548
EST:     GGAAAACCTCAAAACCGNTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GAAAAACCTCAAAACCG-TATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162237331|gb|FC412439.1|FC412439
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
EST: gi|162199218|gb|FC375054.1|FC375054
EST:     GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAG                         CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC
genomic: GGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 25 (downstream exon)
Score: 8

GCAAGAATGGCGTTGTTCCTGCTGATGCCACAACCGCGAAGTACTTGGAAGGAAAAACCTCAAAACCGTATCAAGTTTTCACTAGTGATGGAAACGCCAGgtttgtatat ... tcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttttagtgctaggaaagtttctttttttcaacctcccaatcgtcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG
                aaagtttcttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggctatcaaagtctaagatgttgactaggaaatgagtgtattagatctttttagtgctaggaaagtttctttttttcaacctcccaatcgtcatttgcagCTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA