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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttgcgacccctcactcatgttgcgcgtcctactttgagaaggaacattttagggtcaacactcttaacttctacattttgttggatgtgtgcatagAAACTTCCTGATAAATGTGCGTGGCTTGGGGATTAAAAGCGTTGAATGCATACGGTTACTCACGCTGCATCACCCCTCATTTCCT

Basic information

species Physcomitrella patens
transcript PP1S226_20V6.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15327273|gb|BI487859.1|BI487859
EST:     GGGAGTCTTGACCTTGAATGGATTCGAAAACTCTCTCCCATCGATTCTCA                         AAACTTCCTGATAAATGTGCGTGGCTTGGGGATTAAAAGCGTTGAATGCAT
genomic: GGGAGTCTTGACCTTGAATGGATTCGAAAACTCTCTCCCATCGATTCTCAgtaagcttgc ... gtgtgcatagAAACTTCCTGATAAATGTGCGTGGCTTGGGGATTAAAAGCGTTGAATGCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaacattttagggtcaacactcttaacttctacattttgttggatgtgtgcatagAAACTTCCTGATAAATGTGCGTGGCTTGGGGATTAAAAGCGTTGAATGCATACGGTTACTCACGCTGCATCACCCCTCATTTCCT
                    tcttaac  putative branch site (score: 2)
                              tacatttt  TA-rich tract