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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtcattttgttctttattcttccgttgttagattctcgcatcagcattgagctggggttcaacctactttatccctgctatacaattctgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTTCAGGGAGGTCCCCACAACCATACCATCACTGGTCTTGCTGTTGCCCTGA

Basic information

species Physcomitrella patens
transcript PP1S21_270V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162166065|gb|FC340461.1|FC340461
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162163180|gb|FC340234.1|FC340234
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162179305|gb|FC356254.1|FC356254
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162195515|gb|FC370906.1|FC370906
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162204585|gb|FC381969.1|FC381969
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|22492390|gb|BU052313.1|BU052313
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162222160|gb|FC397388.1|FC397388
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162273886|gb|FC450025.1|FC450025
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATG
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATG
EST: gi|162157150|gb|FC333720.1|FC333720
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGA
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGA
EST: gi|162158553|gb|FC334556.1|FC334556
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162180035|gb|FC356106.1|FC356106
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162199804|gb|FC376397.1|FC376397
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCG
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCG
EST: gi|162176992|gb|FC353669.1|FC353669
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|100447569|gb|CJ971868.1|CJ971868
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCCGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162157748|gb|FC335462.1|FC335462
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGA
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGA
EST: gi|162199622|gb|FC373274.1|FC373274
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162161888|gb|FC337964.1|FC337964
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162166993|gb|FC342455.1|FC342455
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162199573|gb|FC373225.1|FC373225
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162188060|gb|FC365258.1|FC365258
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162164433|gb|FC341052.1|FC341052
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTTCCCTGGACT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTT-CCCTGGACT
EST: gi|162206365|gb|FC382643.1|FC382643
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162219994|gb|FC395366.1|FC395366
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162167058|gb|FC342520.1|FC342520
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162153713|gb|FC329116.1|FC329116
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162160754|gb|FC336653.1|FC336653
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162273885|gb|FC450024.1|FC450024
EST:     ACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTCCCCTGGACTT
genomic: ACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|67569716|gb|BJ942540.1|BJ942540
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162196885|gb|FC375162.1|FC375162
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|100382988|gb|BY986984.1|BY986984
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTTCCCTGGACT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTT-CCCTGGACT
EST: gi|162182206|gb|FC358221.1|FC358221
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162164431|gb|FC341050.1|FC341050
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162265229|gb|FC441316.1|FC441316
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162178246|gb|FC354652.1|FC354652
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162180258|gb|FC355263.1|FC355263
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162234140|gb|FC410354.1|FC410354
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGAATCA-TGCATCCGTTTTTCCTGGACT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGA-TCAATGCATCCGTTTTCCCTGGACT
EST: gi|162184985|gb|FC362431.1|FC362431
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|100390305|gb|BY952713.1|BY952713
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162183896|gb|FC360202.1|FC360202
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162225773|gb|FC400713.1|FC400713
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAAGGTGAACAG                         GTGTTCTACGATTATGAAGATNAGATCAATGCATCC
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCC
EST: gi|161978982|gb|EE296273.1|EE296273
EST:     GATCTTCTACCGTAAGGGTCTGAAGGAGACAANCCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTNCCCTGGACT
genomic: GATCTTCTACCGTAAGGGTCTGAAGGAGACAA-CCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTT-CCCTGGACT
EST: gi|162243208|gb|FC415560.1|FC415560
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162151096|gb|FC327121.1|FC327121
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|161970270|gb|EE296251.1|EE296251
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTNCTACGATTATGAAGATAAGATCAATGCCATCCGTTTTCCCTGGACT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGC-ATCCGTTTTCCCTGGACT
EST: gi|162180523|gb|FC356165.1|FC356165
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162195138|gb|FC368813.1|FC368813
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162180559|gb|FC356201.1|FC356201
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162192085|gb|FC367298.1|FC367298
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162280199|gb|FC456008.1|FC456008
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162181276|gb|FC357045.1|FC357045
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162151551|gb|FC327264.1|FC327264
EST:     CTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: CTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162219920|gb|FC396735.1|FC396735
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162231324|gb|FC407059.1|FC407059
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATCAGATCAATGCATCCGTTTTCTCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162178476|gb|FC354200.1|FC354200
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATNAGATCAATGCATCCGTTTTCCCTGGACT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACT
EST: gi|100374630|gb|BY985864.1|BY985864
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162166235|gb|FC342633.1|FC342633
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
EST: gi|162166332|gb|FC342925.1|FC342925
EST:     TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAG                         GTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT
genomic: TGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 328

TGTTGTTACCACCACGACTCACAAGTCTCTCCGGGGACCTCGAGGTGCGATGATCTTCTACCGTAAGGGTCTGAAGGAGACAACCAAGAAGGGTGAACAGgtaaagtact ... tgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTTCAGGGAGGTCCCCACAACCATACCATCACTGGTCTTGCTGTTGCCCTGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcattgagctggggttcaacctactttatccctgctatacaattctgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTTCAGGGAGGTCCCCACAACCATACCATCACTGGTCTTGCTGTTGCCCTGA
                                          ttctgtt  CT-rich tract
                                   tatacaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgtcattttgttctttattcttccgttgttagattctcgcatcagcattgagctggggttcaacctactttatccctgctatacaattctgttgtgcagGTGTTCTACGATTATGAAGATAAGATCAATGCATCCGTTTTCCCTGGACTTCAGGGAGGTCCCCACAACCATACCATCACTGGTCTTGCTGTTGCCCTGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT