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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgcatcaagcctttcatgttatatactaagctcttggcataatatttttttacttctgcaagcagaggcttattaacctgatgcaatgcttttgtccagATTCCATTTTGTGTAGTGATCGGGTGGCCTATGAGAACGCATATGGACCTCAACTTTGAACTGTTTGAAACTGCGACACTATTCATAACAGTTCTAGTGG

Basic information

species Physcomitrella patens
transcript PP1S21_141V6.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37827722|gb|BJ585734.1|BJ585734
EST:     CCATGTTTGTG                         ATTCCATTTTGTGTAGTGATCGGGTGNCCTATGAGAACGCATATGGACCTC
genomic: CCATGTTTGTGgtaagttgca ... ttttgtccagATTCCATTTTGTGTAGTGATCGGGTGGCCTATGAGAACGCATATGGACCTC
EST: gi|100420664|gb|BY993453.1|BY993453
EST:     CTCGCTTGGGGTGGCCATCGGTTCTTCCACTCAGATCTCCCATGTT-GTG                         ATTCCATTTTGTGTAGTGATCGGGTGGGCTATGAGAACGCATATGGACCT
genomic: CTCGCTTGGGGTGGCCATCGGTTCTTCCACTCAGATCTCC-ATGTTTGTGgtaagttgca ... ttttgtccagATTCCATTTTGTGTAGTGATCGGGTGGCCTATGAGAACGCATATGGACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttacttctgcaagcagaggcttattaacctgatgcaatgcttttgtccagATTCCATTTTGTGTAGTGATCGGGTGGCCTATGAGAACGCATATGGACCTCAACTTTGAACTGTTTGAAACTGCGACACTATTCATAACAGTTCTAGTGG
                                            cttttgtcc  CT-rich tract
                         ttattaa  TA-rich tract