1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tcttgagtggaatttccagctcttatgctattcataagccatactttgtgaagatcctggcatagtggtgaatattgatgttatgtttctggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC
species | Physcomitrella patens |
transcript | PP1S219_94V6.4 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|162270288|gb|FC447300.1|FC447300
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|162149641|gb|FC325834.1|FC325834
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|162179399|gb|FC355399.1|FC355399
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|162270289|gb|FC447301.1|FC447301
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|162166751|gb|FC342720.1|FC342720
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|162152577|gb|FC328855.1|FC328855
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|162179008|gb|FC354316.1|FC354316
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|37840646|gb|BJ598654.1|BJ598654
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: TGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|162192024|gb|FC367237.1|FC367237
genomic: TGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|162166619|gb|FC343511.1|FC343511
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|208382503|gb|DC923173.1|DC923173
genomic: CATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: TGATCTAGCTGGTCATCAAGATGNTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|162150766|gb|FC327038.1|FC327038
genomic: TGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|162156545|gb|FC332153.1|FC332153
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|162179121|gb|FC355586.1|FC355586
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|162179122|gb|FC355587.1|FC355587
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|208373778|gb|DC956294.1|DC956294
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|208396900|gb|DC915948.1|DC915948
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|162150767|gb|FC327039.1|FC327039
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|208349261|gb|DC918011.1|DC918011
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|18338206|gb|BJ170230.1|BJ170230
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: AGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|162270867|gb|FC446896.1|FC446896
genomic: AGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTNTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|162190654|gb|FC367540.1|FC367540
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|162149669|gb|FC326720.1|FC326720
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCEST: gi|162156546|gb|FC332154.1|FC332154
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
EST: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAA ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
genomic: CTTGATCTAGCTGGTCATCAAGATGTTTCTATCATGGCTTATACAGCCAAgtaatgctct ... ggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCC
ttgtgaagatcctggcatagtggtgaatattgatgttatgtttctggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC
tattgat putative branch site (score: 3)
aatattgatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgagtggaatttccagctcttatgctattcataagccatactttgtgaagatcctggcatagtggtgaatattgatgttatgtttctggctgtgcagATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC