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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctctgttcatctctaacactaagtcataggtagatcatgtcttcgttttcattgtagtctgtcatgaatacgatatgtttcatcatctttgccttctctttatgtttttttaattccgattaatgatcatgcacagATTCGTGAGATTAAGGAAGCTCAAATGGGACACCCAGGGTCAGAGAGTGTAGAGGTTTTGATGGGGGGTACAACATTTTTAACTCCATCAGATATGCGGG

Basic information

species Physcomitrella patens
transcript PP1S203_96V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162219984|gb|FC395356.1|FC395356
EST:     ATTACAGGACAATCATTGTGTTTGTTGTTGGTGGAATCAGCGGTTCCGAG                         ATTCGTGAGATTAAGGAAGCTCAAATGGGACACCCAGGGTCAGAGAGTGTA
genomic: ATTACAGGACAATCATTGTGTTTGTTGTTGGTGGAATCAGCGGTTCCGAGgtaagtctct ... tcatgcacagATTCGTGAGATTAAGGAAGCTCAAATGGGACACCCAGGGTCAGAGAGTGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatctttgccttctctttatgtttttttaattccgattaatgatcatgcacagATTCGTGAGATTAAGGAAGCTCAAATGGGACACCCAGGGTCAGAGAGTGTAGAGGTTTTGATGGGGGGTACAACATTTTTAACTCCATCAGATATGCGGG
                                    gattaat  putative branch site (score: 3)
            ttctctttatgttttt  TA-rich tract