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gtattaatcaaacttcaactttgttgttccttctgcatgaaggatcagtgttgactattgacaaatttcaatggtgcttgttcgtctgacattttatcggtttaggtgagttctgttccacatggatgcagtgacgataatgttgtaaaaatgttgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGCCAATCCTTTACTGGCAAGCAGCGT
species | Physcomitrella patens |
transcript | PP1S1_300V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|162278601|gb|FC454999.1|FC454999
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|208365212|gb|DC950739.1|DC950739
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|162193915|gb|FC371728.1|FC371728
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|162171403|gb|FC346678.1|FC346678
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|208378504|gb|DC927201.1|DC927201
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|208396143|gb|DC924609.1|DC924609
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|208348185|gb|DC920976.1|DC920976
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|67698768|gb|BJ959001.1|BJ959001
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: AGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|162152140|gb|FC328730.1|FC328730
genomic: AGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|18333622|gb|BJ165637.1|BJ165637
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|208394809|gb|DC920152.1|DC920152
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GATATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGTGGGEST: gi|37834323|gb|BJ592335.1|BJ592335
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|208352801|gb|DC917765.1|DC917765
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|208385201|gb|DC923581.1|DC923581
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGNTGGGGGEST: gi|208352520|gb|DC918229.1|DC918229
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|162171402|gb|FC346677.1|FC346677
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|208398545|gb|DC916516.1|DC916516
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|208358947|gb|DC946376.1|DC946376
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|18338549|gb|BJ170573.1|BJ170573
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|162278600|gb|FC454998.1|FC454998
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|208349119|gb|DC925902.1|DC925902
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGEST: gi|67694190|gb|BJ954423.1|BJ954423
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
EST: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAG AGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
genomic: GGTATCTTTATGTACCCTGGTGACAAGAAAAGCCCCAAAGGAAAGCTCAGgtattaatca ... tgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGG
gttctgttccacatggatgcagtgacgataatgttgtaaaaatgttgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGCCAATCCTTTACTGGCAAGCAGCGT
ataatgttgtaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattaatcaaacttcaactttgttgttccttctgcatgaaggatcagtgttgactattgacaaatttcaatggtgcttgttcgtctgacattttatcggtttaggtgagttctgttccacatggatgcagtgacgataatgttgtaaaaatgttgtgcttcagAGTTCTGTACGAGGTTTTCCCCATGTCTTTCTTGGTGGAGCAAGCTGGGGGCCAATCCTTTACTGGCAAGCAGCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG