1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacttgcccgacaagtttgtgatgaggtctaactcggtaatgagtatggaagttatgagcttctctcacagtcgatacattacagcctttgttcgttaaacacacgagctatggttgagagacctgtgtatttgtgataatttttatactactgataggctgagatttttttctgaccatgttgtgaggacttgcagGTGATGGAAAAGATCAACAATCCTCATTACTTGTATCGCATGACGGTGCTTGTGGCCATTTCCCTTCTTGCTCCTGTTGTTGGTGCCGAAGCCACCTGCC
species | Physcomitrella patens |
transcript | PP1S197_114V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGCCGAAGAGTTCGGTTCCGAGTGGGCATTGCAACACATCATTCCACAG GTGATGGAAAAGATCAACAATCCTCATTACTTGTATCGCATGACGGTGCTTEST: gi|162169851|gb|FC346207.1|FC346207
genomic: TTGCCGAAGAGTTCGGTTCCGAGTGGGCATTGCAACACATCATTCCACAGgtacttgccc ... ggacttgcagGTGATGGAAAAGATCAACAATCCTCATTACTTGTATCGCATGACGGTGCTT
EST: TTGCCGAAGAGTTCGGTTCCGAGTGGGCATTGCAACACATCATTCCACAG GTGATGGAAAAGATCAACAATCCTCATTACTTGTATCGCATGACGGTGCTTEST: gi|67726784|gb|BJ977043.1|BJ977043
genomic: TTGCCGAAGAGTTCGGTTCCGAGTGGGCATTGCAACACATCATTCCACAGgtacttgccc ... ggacttgcagGTGATGGAAAAGATCAACAATCCTCATTACTTGTATCGCATGACGGTGCTT
EST: TTGCCGAAGAGTTCGGTTCCGAGTGGGCATTGCAACACATCATTCCACAG GTGATGGAAAAGATCAACAATCCTCATTACTTGTATCGCATGACGGTGCTT
genomic: TTGCCGAAGAGTTCGGTTCCGAGTGGGCATTGCAACACATCATTCCACAGgtacttgccc ... ggacttgcagGTGATGGAAAAGATCAACAATCCTCATTACTTGTATCGCATGACGGTGCTT
tttatactactgataggctgagatttttttctgaccatgttgtgaggacttgcagGTGATGGAAAAGATCAACAATCCTCATTACTTGTATCGCATGACGGTGCTTGTGGCCATTTCCCTTCTTGCTCCTGTTGTTGGTGCCGAAGCCACCTGCC
ttctgac putative branch site (score: 9)
agattttttt TA-rich tract