Sequence
atgc intronic sequence ATGC exonic sequence...ctctcatactttcgaagctgttgacgttattggctgtgtgtttaattctacctggataatagtaatcaatgtggctaagaggagtgtctctgtgaggcagATTCTGTGTCTTTTGGCCATGGAAAAACCAATTTCCCTCAGTCCTGAGCATATTCGGGATGAGAAAGTCAAG
Basic information
species | Physcomitrella patens |
transcript | PP1S192_39V6.4 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: PP1S192_39V6.4 (Physcomitrella patens), 3'ss of exon 9
lower sequence: GLYMA19G24250.3 (Glycine max), 3'ss of exon 9
ctctcatactttcgaagctgttgacgttattggctgtgtgtttaatt-----ctacctggataatagtaatcaatgtggctaagaggagtgtctctgtgaggcagATTCTGTGTCTTTTGGCCATGGAAAAACCAATTTCCCTCAGTCCTGAGCATATTCGGGATGAGAAAGTCAAG
| | | || || | ||||| | || || ||| || | | ||||| |||| | | ||| | | | | ||| |||| || | | || |||||||||||| |||| ||||| |||||||| ||||||||||||||||| |||
---aaacaaacaccaaatgcttaatgttatccattaaatggttcattagacattatcagcctaatatatgtcaaatttgttaatt--atttttctaccaactcagGTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAG
upper sequence: PP1S192_39V6.4 (Physcomitrella patens), 3'ss of exon 9
lower sequence: GLYMA16G06850.1 (Glycine max), 3'ss of exon 9
ctctcatactttcgaagctgttgacgttattggctgtgtgtttaatt-----ctacctggataatagtaatcaatgtggctaagaggagtgtctctgtgaggcagATTCTGTGTCTTTTGGCCATGGAAAAACCAATTTCCCTCAGTCCTGAGCATATTCGGGATGAGAAAGTCAAG
| | || | | ||||| | | || ||| || | | | || ||| | | | | | | | | | ||| |||| || | | || |||||||||||| |||| ||||| |||||||| ||||||||||||||||| |||
---aagcaaacaccaaatgcataatgttatccattaaataattcattagacattatcagcctgatgtatgccaaatttgttcatt--atttttttaccaactcagGTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAG
upper sequence: PP1S192_39V6.4 (Physcomitrella patens), 3'ss of exon 9
lower sequence: GLYMA19G22690.1 (Glycine max), 3'ss of exon 9
-ctctcatactttcgaagctgttga-cgttattggctgtgtgtttaattctacctggataatagtaatcaatgtggctaagaggagtgtctctgtgagg-cagATTCTGTGTCTTTTGGCCATGGAAAAACCAATTTCCCTCAGTCCTGAGCATATTCGGGATGAGAAAGTCAAG
|| | | | | | || | || | || | || | | | || | ||||| | | | | | ||| | ||| || | || | | || |||||||||||| |||| |||| |||||||| ||||||||||||||| | |||
aacctaacaagacctattaaatagatctttggttacttcatagtttacatcagatcaatctaatatgtcaatcttattcatta---tttttctacaaaatcagGTTTTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAAGCCTGAGCACATTCGGGATGAGAAACTGAAG
upper sequence: PP1S192_39V6.4 (Physcomitrella patens), 3'ss of exon 9
lower sequence: AT5G40760.1 (Arabidopsis thaliana), 3'ss of exon 9
-------------------ctctcatactttcgaagct--gttgacgttat---tggctgtgtgtttaattctacctggataatagta---atcaatg---tggctaagaggagtgtctctgtgaggcagATTCTGTGTCTTTTGGCCATGGAAAAACCAATTTCCCTCAGTCCTGAGCATATTCGGGATGAGAAAGTCAAG
| || | | | || || ||| | | || ||| | | | ||| ||| | | | | ||| || |||| | | | | || |||| || ||| | |||||||| |||||||| || || | ||||||||||| |||||||||||||| |||
gcaagtatacctgagatacttttcctgataacaaaacttcattggaaatctatgtgattgtttttcagagtctctctgtaagttcaaatgctttcatgtattgactaactgagttcataatactctgtagGTTCTTTGCCTTGTTGCCATGGAGAAACCAATATCTCTTAAACCTGAGCATATCCGGGATGAGAAAGTGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162279046|gb|FC455073.1|FC455073EST: AATTATTCGGGACATAATCCAAAATCACCTCATACAG ATTCTGTGTCTTTTGGCCATGGAAAAACCAATTTCCCTCAGTCCTGAGCAT
genomic: AATTATTCGGGACATAATCCAAAATCACCTCATACAGgtttgcccta ... tgtgaggcagATTCTGTGTCTTTTGGCCATGGAAAAACCAATTTCCCTCAGTCCTGAGCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctacctggataatagtaatcaatgtggctaagaggagtgtctctgtgaggcagATTCTGTGTCTTTTGGCCATGGAAAAACCAATTTCCCTCAGTCCTGAGCATATTCGGGATGAGAAAGTCAAG
tgtctct CT-rich tract
ataatagtaatcaat TA-rich tract