1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atatgttttatgttttaatttttcttttttttcttttggcatgctcgtaagttatttatcctagtgacccttgaaaaagaccactcttttctgacgacagGTGAACGAGGCTTTGATGAAAGCTGCCGGACCTCAAGCCTATTTCATGCATTGTCTTCCAGCTGAAAGAGGAGTGGAGATCACTGACGGTGTTATTGAGG
species | Physcomitrella patens |
transcript | PP1S189_99V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCCAGAAGGAGGACGCAGACAACCGGAAGTCGGTTTTCCAGGGTTTCCAG GTGAACGAGGCTTTGATGAAAGCTGCCGGACCTCAAGCCTATTTCATGCATEST: gi|67508196|gb|BJ941067.1|BJ941067
genomic: GCCAGAAGGAGGACGCAGACAACCGGAAGTCGGTTTTCCAGGGTTTCCAGgtaagagcgt ... ctgacgacagGTGAACGAGGCTTTGATGAAAGCTGCCGGACCTCAAGCCTATTTCATGCAT
EST: GCCAGAAGGAGGACGCAGACAACCGGAAGTCGGTTTTCCAGGGTTTCCAG GTGAACGAGGCTTTGATGAAAGCTGCCGGACCTCANGCCTATTTCATGCATEST: gi|162169623|gb|FC345563.1|FC345563
genomic: GCCAGAAGGAGGACGCAGACAACCGGAAGTCGGTTTTCCAGGGTTTCCAGgtaagagcgt ... ctgacgacagGTGAACGAGGCTTTGATGAAAGCTGCCGGACCTCAAGCCTATTTCATGCAT
EST: GCCAGAAGGAGGACGCAGACAACCGGAAGTCGGTTTTCCAGGGTTTCCAG GTGAACGAGGCTTTGATGAAAGCTGCCGGACCTCAAGCCTATTTCATGCATEST: gi|162218791|gb|FC394334.1|FC394334
genomic: GCCAGAAGGAGGACGCAGACAACCGGAAGTCGGTTTTCCAGGGTTTCCAGgtaagagcgt ... ctgacgacagGTGAACGAGGCTTTGATGAAAGCTGCCGGACCTCAAGCCTATTTCATGCAT
EST: GCCAGAAGGAGGACGCAGACAACCGGAAGTCGGTTTTCCAGGGTTTCCAG GTGAACGAGGCTTTGATGAAAGCTGCCGGACCTCAAGCCTATTTCATGCATEST: gi|37851072|gb|BJ609080.1|BJ609080
genomic: GCCAGAAGGAGGACGCAGACAACCGGAAGTCGGTTTTCCAGGGTTTCCAGgtaagagcgt ... ctgacgacagGTGAACGAGGCTTTGATGAAAGCTGCCGGACCTCAAGCCTATTTCATGCAT
EST: GCCAGAAGGAGGACGCAGACAACCGGAAGTCGGTTTTCCAGGGTTTCCAG GTGAACGAGGCTTTGATGAAAGCTGCCGGACCTCAAGCCTATTTCATGCATEST: gi|37851004|gb|BJ609012.1|BJ609012
genomic: GCCAGAAGGAGGACGCAGACAACCGGAAGTCGGTTTTCCAGGGTTTCCAGgtaagagcgt ... ctgacgacagGTGAACGAGGCTTTGATGAAAGCTGCCGGACCTCAAGCCTATTTCATGCAT
EST: GCCAGAAGGAGGACGCAGACAACCGGAAGTCGGTTTTCCAGGGTTTCCAG GTGAACGAGGCTTTGATGAAAGCTGCCGGACCTCAAGCCTATTTCATGCATEST: gi|208367871|gb|DC955334.1|DC955334
genomic: GCCAGAAGGAGGACGCAGACAACCGGAAGTCGGTTTTCCAGGGTTTCCAGgtaagagcgt ... ctgacgacagGTGAACGAGGCTTTGATGAAAGCTGCCGGACCTCAAGCCTATTTCATGCAT
EST: GCCAGAAGGAGGACGCAGACAACCGGAAGTCGGTTTTCCAGGGTTTCCAG GTGAACGAGGCTTTGATGAAAGCTGCCGGACCTCAAGCCTATTTCATGCATEST: gi|67691416|gb|BJ951649.1|BJ951649
genomic: GCCAGAAGGAGGACGCAGACAACCGGAAGTCGGTTTTCCAGGGTTTCCAGgtaagagcgt ... ctgacgacagGTGAACGAGGCTTTGATGAAAGCTGCCGGACCTCAAGCCTATTTCATGCAT
EST: GCCAGAAGGAGGACGCAGACAACCGGAAGTCGGTTTTCCAGGGTTTCCAG GTGAACGAGGCTTTGATGAAAGCTGCCGGACCTCAAGCCTATTTCATGCAT
genomic: GCCAGAAGGAGGACGCAGACAACCGGAAGTCGGTTTTCCAGGGTTTCCAGgtaagagcgt ... ctgacgacagGTGAACGAGGCTTTGATGAAAGCTGCCGGACCTCAAGCCTATTTCATGCAT
cgtaagttatttatcctagtgacccttgaaaaagaccactcttttctgacgacagGTGAACGAGGCTTTGATGAAAGCTGCCGGACCTCAAGCCTATTTCATGCATTGTCTTCCAGCTGAAAGAGGAGTGGAGATCACTGACGGTGTTATTGAGG
ttctgac putative branch site (score: 10)
ccactcttttct CT-rich tract
ttatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgttttatgttttaatttttcttttttttcttttggcatgctcgtaagttatttatcctagtgacccttgaaaaagaccactcttttctgacgacagGTGAACGAGGCTTTGATGAAAGCTGCCGGACCTCAAGCCTATTTCATGCATTGTCTTCCAGCTGAAAGAGGAGTGGAGATCACTGACGGTGTTATTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA