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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgaaatgactttcaacttaactcattctttgcccttgatgaggcctatctgttgcacagtatattatcactcaatgcgtgttcttttgtagtgatgaaggctttccgactatcattggaagctcataaggtagtgcaattgtttctttcaattggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAATCCATCCGGGAAGAGGCTGAGGCCATGCAGCCAGAGATGTAGTCTAATA

Basic information

species Physcomitrella patens
transcript PP1S17_59V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162268500|gb|FC444373.1|FC444373
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|208377588|gb|DC922691.1|DC922691
EST:     CAGCTGTCGAGGCGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|67728207|gb|BJ978466.1|BJ978466
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|208394494|gb|DC953533.1|DC953533
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|162171168|gb|FC347782.1|FC347782
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|18339727|gb|BJ171754.1|BJ171754
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|18339387|gb|BJ171414.1|BJ171414
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|37845880|gb|BJ603888.1|BJ603888
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|18335316|gb|BJ167334.1|BJ167334
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAGATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|162164731|gb|FC340778.1|FC340778
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|162263267|gb|FC438555.1|FC438555
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|37847445|gb|BJ605453.1|BJ605453
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|37823802|gb|BJ581868.1|BJ581868
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|67727983|gb|BJ978242.1|BJ978242
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|208344999|gb|DC925409.1|DC925409
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|18340053|gb|BJ172081.1|BJ172081
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|6166975|gb|AW145239.1|AW145239
EST:     CAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|208399703|gb|DC924901.1|DC924901
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|37822310|gb|BJ580376.1|BJ580376
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|37849938|gb|BJ607946.1|BJ607946
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|18335899|gb|BJ167920.1|BJ167920
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|162150188|gb|FC326065.1|FC326065
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|67720467|gb|BJ970726.1|BJ970726
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|18335231|gb|BJ167249.1|BJ167249
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|67723616|gb|BJ973875.1|BJ973875
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|162216430|gb|FC393263.1|FC393263
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|162219191|gb|FC396630.1|FC396630
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|208395218|gb|DC916027.1|DC916027
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|67720311|gb|BJ970570.1|BJ970570
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|37851880|gb|BJ609888.1|BJ609888
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|162278511|gb|FC453973.1|FC453973
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|37834751|gb|BJ592763.1|BJ592763
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|67698281|gb|BJ958514.1|BJ958514
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|162277366|gb|FC453172.1|FC453172
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|162278510|gb|FC453972.1|FC453972
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|37847513|gb|BJ605521.1|BJ605521
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|162219190|gb|FC396629.1|FC396629
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|162237880|gb|FC412507.1|FC412507
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|37826715|gb|BJ584727.1|BJ584727
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|18339112|gb|BJ171138.1|BJ171138
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|67728189|gb|BJ978448.1|BJ978448
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|37821669|gb|BJ579735.1|BJ579735
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|37849484|gb|BJ607492.1|BJ607492
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|37830352|gb|BJ588364.1|BJ588364
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|37833051|gb|BJ591063.1|BJ591063
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|67697830|gb|BJ958063.1|BJ958063
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|208381978|gb|DC923837.1|DC923837
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|18335080|gb|BJ167098.1|BJ167098
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAGATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
EST: gi|162273731|gb|FC449454.1|FC449454
EST:     CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCG                         GTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA
genomic: CAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 35

GTTGGAATTTCCTCAGGAGCTGCTACAGCCGCAGCTGTCGAGGTGGCCAAGAGGCCAGAAAATGCCGGAAAATTGATTGCGgtacgaaatg ... attggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAATCCATCCGGGAAGAGGCTGAGGCCATGCAGCCAGAGATGTAGTCTAATA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgactatcattggaagctcataaggtagtgcaattgtttctttcaattggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAATCCATCCGGGAAGAGGCTGAGGCCATGCAGCCAGAGATGTAGTCTAATA
                               aattgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgaaatgactttcaacttaactcattctttgcccttgatgaggcctatctgttgcacagtatattatcactcaatgcgtgttcttttgtagtgatgaaggctttccgactatcattggaagctcataaggtagtgcaattgtttctttcaattggtgcagGTGATTCTTCCCAGCTTCGGAGAACGGTATTTGTCGTCTGTGCTGTTCCAATCCATCCGGGAAGAGGCTGAGGCCATGCAGCCAGAGATGTAGTCTAATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG