1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtaagtgagacagttatctttttatagtaaagtgacctatttagttgtatttaaacccatttgatgtcacatttgactagacccgttttatcgttcacggtttttactagcaccaatattaacaatcgtcgtcttgcttgatcagTTATGATGCACTTCATGGTGTTGCTGGTGTGTACGCCAAAAAGATCTTCTTGGAAGAATTGGGAGCAAAGGAAAGCTCATTGTTAAACTGCGAGCCGAAG
species | Physcomitrella patens |
transcript | PP1S168_70V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GACTTCACAGCAATCAAGGATTTGATCACAAACCCTAAGTTTACCTTCTG TTATGATGCACTTCATGGTGTTGCTGGTGTGTACGCCAAAAAGATCTTCTTEST: gi|162194861|gb|FC370525.1|FC370525
genomic: GACTTCACAGCAATCAAGGATTTGATCACAAACCCTAAGTTTACCTTCTGgtaagtgaga ... gcttgatcagTTATGATGCACTTCATGGTGTTGCTGGTGTGTACGCCAAAAAGATCTTCTT
EST: GACTTCACAGCAATCAAGGATTTGATCACAAACCCTAAGTTTACCTTTTG TTATGATGCACTTCATGGTGTTGCTGGTGTGTACGCCAAAAAGATCTTCTTEST: gi|162223684|gb|FC399457.1|FC399457
genomic: GACTTCACAGCAATCAAGGATTTGATCACAAACCCTAAGTTTACCTTCTGgtaagtgaga ... gcttgatcagTTATGATGCACTTCATGGTGTTGCTGGTGTGTACGCCAAAAAGATCTTCTT
EST: GACTTCACAGCAATCAAGGATTTGATCACAAACCCTAAGTTTACCTTTTG TTATGATGCACTTCATGGTGTTGCTGGTGTGTACGCCAAAAAGATCTTCTTEST: gi|100405914|gb|BY991447.1|BY991447
genomic: GACTTCACAGCAATCAAGGATTTGATCACAAACCCTAAGTTTACCTTCTGgtaagtgaga ... gcttgatcagTTATGATGCACTTCATGGTGTTGCTGGTGTGTACGCCAAAAAGATCTTCTT
EST: CTTCACAGCAATCAAGGATTTGATCANCAA-CCCTAAGTTTACCTTTCTG T-ATGATGCACTTCATGGTGTTGCTGGTGTGTACGCCAAAA-GATCTTCTEST: gi|162162825|gb|FC338087.1|FC338087
genomic: CTTCACAGCAATCAAGGATTTGATCA-CAAACCCTAAGTTTACCTT-CTGgtaagtgaga ... gcttgatcagTTATGATGCACTTCATGGTGTTGCTGGTGTGTACGCCAAAAAGATCTTCT
EST: GACTTCACAGCAATCAAGGATTTGATCACAAACCCTAAGTTTACCTTTTG TTATGATGCACTTCATGGTGTTGCTGGTGTGTACGCCAAANAGATCTTCTTEST: gi|162193559|gb|FC370462.1|FC370462
genomic: GACTTCACAGCAATCAAGGATTTGATCACAAACCCTAAGTTTACCTTCTGgtaagtgaga ... gcttgatcagTTATGATGCACTTCATGGTGTTGCTGGTGTGTACGCCAAAAAGATCTTCTT
EST: GACTTCACAGCAATCAAGGATTTGATCACAAACCCTAAGTTTACCTTTTG TTATGATGCACTTCATGGTGTTGCTGGTGTGTACGEST: gi|162164264|gb|FC342079.1|FC342079
genomic: GACTTCACAGCAATCAAGGATTTGATCACAAACCCTAAGTTTACCTTCTGgtaagtgaga ... gcttgatcagTTATGATGCACTTCATGGTGTTGCTGGTGTGTACG
EST: GACTTCACAGCAATCAAGGATTTGATCACAAACCCTAAGTTTACCTTTTG TTATGATGCACTTCATGGTGTTGCTGGTGTGTACGCCAAAAAGATCTTCTT
genomic: GACTTCACAGCAATCAAGGATTTGATCACAAACCCTAAGTTTACCTTCTGgtaagtgaga ... gcttgatcagTTATGATGCACTTCATGGTGTTGCTGGTGTGTACGCCAAAAAGATCTTCTT
tcgttcacggtttttactagcaccaatattaacaatcgtcgtcttgcttgatcagTTATGATGCACTTCATGGTGTTGCTGGTGTGTACGCCAAAAAGATCTTCTTGGAAGAATTGGGAGCAAAGGAAAGCTCATTGTTAAACTGCGAGCCGAAG
tattaac putative branch site (score: 1)
tcttgctt putative PPT
aatattaacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgagacagttatctttttatagtaaagtgacctatttagttgtatttaaacccatttgatgtcacatttgactagacccgttttatcgttcacggtttttactagcaccaatattaacaatcgtcgtcttgcttgatcagTTATGATGCACTTCATGGTGTTGCTGGTGTGTACGCCAAAAAGATCTTCTTGGAAGAATTGGGAGCAAAGGAAAGCTCATTGTTAAACTGCGAGCCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA