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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaatttacatgtgattgatctatactgctgtcaaaagtgtccgttcaacgtatgtattgtattctgttgtacagttctgagggttgaatgttttgtctattctttgtcgaatcttgtaccttactctttcttcttaatttattgcagGTGGAGGCAGTGCTGATAGGCTCTGTATATGTCGACAACGTCATGCTTCACGCTGACCCGTTCCATAGTTATACTGTCGCACTTATAGTGGCAAACCAAG

Basic information

species Physcomitrella patens
transcript PP1S15_17V6.1
intron # 9
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtctattctttgtcgaatcttgtaccttactctttcttcttaatttattgcagGTGGAGGCAGTGCTGATAGGCTCTGTATATGTCGACAACGTCATGCTTCACGCTGACCCGTTCCATAGTTATACTGTCGCACTTATAGTGGCAAACCAAG
                                       tcttaat  putative branch site (score: 3)
                          ccttactctttcttct  CT-rich tract
                                  tttcttcttaatttat  TA-rich tract