1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atcacatgttctttattcatatgattttacgagctttgggtgtgattttttgaaccctctgatactttttctataatttatttatatgttgatgtttcagATTTGGACAAGTTCTTGCTTCAAGAGCTGTTAGAGCTGCCCACTGCCTCACCTCAATCCAG
species | Physcomitrella patens |
transcript | PP1S150_95V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCACAGCAAGTCATATACGAACTACGAGTATACTCTCTTGAAGAAGCCAC ATTTGGACAAGTTCTTGCTTCAAGAGCTGTTAGAGCTGCCCACTGCCTCACEST: gi|162194031|gb|FC370206.1|FC370206
genomic: TCACAGCAAGTCATATACGAACTACGAGTATACTCTCTTGAAGAAGCCACgtaagttagc ... gatgtttcagATTTGGACAAGTTCTTGCTTCAAGAGCTGTTAGAGCTGCCCACTGCCTCAC
EST: TCACAGCAAGTCATATACGAACTACGAGTATACTCTCTTGAAGAAGCCAC ATTTGGACAAGTTCTTGCTTCAAGAGCTGTTAGAGCTGCCCACTGCCTCACEST: gi|162150990|gb|FC327886.1|FC327886
genomic: TCACAGCAAGTCATATACGAACTACGAGTATACTCTCTTGAAGAAGCCACgtaagttagc ... gatgtttcagATTTGGACAAGTTCTTGCTTCAAGAGCTGTTAGAGCTGCCCACTGCCTCAC
EST: AGCAAGTCATATACGAACTACGAGTATACTCTCTTGAAGAAGCCAC ATTGGGACAAGTTCTTGCTTCAAGAGCTGTTAGAGCTGCCCAATGCCTCACEST: gi|162227631|gb|FC402624.1|FC402624
genomic: AGCAAGTCATATACGAACTACGAGTATACTCTCTTGAAGAAGCCACgtaagttagc ... gatgtttcagATTTGGACAAGTTCTTGCTTCAAGAGCTGTTAGAGCTGCCCACTGCCTCAC
EST: TCACAGCAAGTCATATACGAACTACGAGTATACTCTCTTGAAGAAGCCAC ATTTGGACAAGTTCTTGCTTCAAGAGCTGTTAGAGCTGCCCACTGCCTCACEST: gi|162195510|gb|FC370901.1|FC370901
genomic: TCACAGCAAGTCATATACGAACTACGAGTATACTCTCTTGAAGAAGCCACgtaagttagc ... gatgtttcagATTTGGACAAGTTCTTGCTTCAAGAGCTGTTAGAGCTGCCCACTGCCTCAC
EST: TCTCTTGAAGAAGCCAC ATTTGGACAAGTTCTTGCTTCAAGAGCTGTTAGAGCTGCCCACTGCCTCACEST: gi|162178843|gb|FC354775.1|FC354775
genomic: TCTCTTGAAGAAGCCACgtaagttagc ... gatgtttcagATTTGGACAAGTTCTTGCTTCAAGAGCTGTTAGAGCTGCCCACTGCCTCAC
EST: TCACAGCAAGTCATATACGAACTACGAGTATACTCTCTTGAAGAAGCCAC ATTTGGACAAGTTCTTGCTTCAAGAGCTGTTAGAGCTGCCCACTGCCTCAC
genomic: TCACAGCAAGTCATATACGAACTACGAGTATACTCTCTTGAAGAAGCCACgtaagttagc ... gatgtttcagATTTGGACAAGTTCTTGCTTCAAGAGCTGTTAGAGCTGCCCACTGCCTCAC
ttttttgaaccctctgatactttttctataatttatttatatgttgatgtttcagATTTGGACAAGTTCTTGCTTCAAGAGCTGTTAGAGCTGCCCACTGCCTCACCTCAATCCAG
tgttgat putative branch site (score: 3)
atactttttctataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcacatgttctttattcatatgattttacgagctttgggtgtgattttttgaaccctctgatactttttctataatttatttatatgttgatgtttcagATTTGGACAAGTTCTTGCTTCAAGAGCTGTTAGAGCTGCCCACTGCCTCACCTCAATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- cacatgt