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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cacctaatagaaactgtatttaatgtctttgtgttgcgagtgttgaaggtaggggaattctatagaaagaattgatcttttcttcttgaactatttgcagGTTACTAGCGTGAAGTTCGTTGCAAAAGACGAATGTGCTCTTACTGGCTCTGTTGATAAG

Basic information

species Physcomitrella patens
transcript PP1S14_250V6.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100381276|gb|BY950059.1|BY950059
EST:     ACCGAAGTTCTGGAGAACTCGTCTCTACTCTATCTGGTCACAGCAAACGT                         GTTACTAGCGTGAAGTTCGTTGCAAAAGACGAATGTGCTCTTACTGGCTCT
genomic: ACCGAAGTTCTGGAGAACTCGTCTCTACTCTATCTGGTCACAGCAAACGTgtaagactca ... ctatttgcagGTTACTAGCGTGAAGTTCGTTGCAAAAGACGAATGTGCTCTTACTGGCTCT
EST: gi|162238756|gb|FC419054.1|FC419054
EST:     ACCGAAGTTCTGGAGAACTCGTCTCTACTCTATCTGGTCACAGCAAACGT                         GTTACTAGCGTGAAGTTCGTTGCAA
genomic: ACCGAAGTTCTGGAGAACTCGTCTCTACTCTATCTGGTCACAGCAAACGTgtaagactca ... ctatttgcagGTTACTAGCGTGAAGTTCGTTGCAA
EST: gi|162182529|gb|FC357504.1|FC357504
EST:     ACCGAAGTTCTGGAGAACTCGTCTCTACTCTATCTGGTCACAGCAAACGT                         GTTACTAGCGTGAAGTTCGTTGCAAAAGACGAATGTGCTCTTACTGGCTCT
genomic: ACCGAAGTTCTGGAGAACTCGTCTCTACTCTATCTGGTCACAGCAAACGTgtaagactca ... ctatttgcagGTTACTAGCGTGAAGTTCGTTGCAAAAGACGAATGTGCTCTTACTGGCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaggtaggggaattctatagaaagaattgatcttttcttcttgaactatttgcagGTTACTAGCGTGAAGTTCGTTGCAAAAGACGAATGTGCTCTTACTGGCTCTGTTGATAAG
                        aattgat  putative branch site (score: 4)
          aattctata  TA-rich tract