1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgagaatgtttttgtaattcctttctatttgtgtacaatgtaatttgattttgtagttgggaagacttgtgttcaaattttgctgagcgttttttttcagGCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCAATGAAGGCTACTCTATCTGGTTTACCAGAGAAGACTTTTATGAAGATAA
species | Physcomitrella patens |
transcript | PP1S13_127V6.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACANTGAAGAACAG GCAGTGGAAAAATTTGGCGANGTAGATGTTTACACTTCGNCCTTTAGGCCAEST: gi|37844512|gb|BJ602520.1|BJ602520
genomic: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAGgtgtgtgctt ... tttttttcagGCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCA
EST: CGGTGTTCACTCANCCTCCTATCGGAACAGTCGGTTACACTGAAGAACAG GCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCAEST: gi|162220508|gb|FC396045.1|FC396045
genomic: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAGgtgtgtgctt ... tttttttcagGCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCA
EST: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAG GCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCAEST: gi|162220509|gb|FC396046.1|FC396046
genomic: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAGgtgtgtgctt ... tttttttcagGCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCA
EST: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAG GCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCAEST: gi|162226395|gb|FC403311.1|FC403311
genomic: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAGgtgtgtgctt ... tttttttcagGCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCA
EST: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAG GCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCAEST: gi|37843971|gb|BJ601979.1|BJ601979
genomic: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAGgtgtgtgctt ... tttttttcagGCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCA
EST: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAG GCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCAEST: gi|37827821|gb|BJ585833.1|BJ585833
genomic: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAGgtgtgtgctt ... tttttttcagGCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCA
EST: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAG GCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCAEST: gi|37830683|gb|BJ588695.1|BJ588695
genomic: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAGgtgtgtgctt ... tttttttcagGCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCA
EST: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAG GCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCAEST: gi|37826872|gb|BJ584884.1|BJ584884
genomic: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAGgtgtgtgctt ... tttttttcagGCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCA
EST: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAG GCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCAEST: gi|208393557|gb|DC949719.1|DC949719
genomic: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAGgtgtgtgctt ... tttttttcagGCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCA
EST: CAGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAG GCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCAEST: gi|162256496|gb|FC432527.1|FC432527
genomic: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAGgtgtgtgctt ... tttttttcagGCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCA
EST: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAG GCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCAEST: gi|37825350|gb|BJ583416.1|BJ583416
genomic: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAGgtgtgtgctt ... tttttttcagGCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCA
EST: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAG GCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCAEST: gi|67697363|gb|BJ957596.1|BJ957596
genomic: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAGgtgtgtgctt ... tttttttcagGCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCA
EST: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAG GCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCAEST: gi|208392896|gb|DC928582.1|DC928582
genomic: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAGgtgtgtgctt ... tttttttcagGCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCA
EST: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAG GCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCAEST: gi|37852204|gb|BJ610212.1|BJ610212
genomic: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAGgtgtgtgctt ... tttttttcagGCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCA
EST: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAG GCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCA
genomic: CGGTGTTCACTCAACCTCCTATCGGAACAGTCGGTTACACTGAAGAACAGgtgtgtgctt ... tttttttcagGCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCA
tgattttgtagttgggaagacttgtgttcaaattttgctgagcgttttttttcagGCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCAATGAAGGCTACTCTATCTGGTTTACCAGAGAAGACTTTTATGAAGATAA
atttgat putative branch site (score: 13)
cgttttttttc putative PPT
ttcaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagaatgtttttgtaattcctttctatttgtgtacaatgtaatttgattttgtagttgggaagacttgtgttcaaattttgctgagcgttttttttcagGCAGTGGAAAAATTTGGCGACGTAGATGTTTACACTTCGACCTTTAGGCCAATGAAGGCTACTCTATCTGGTTTACCAGAGAAGACTTTTATGAAGATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA