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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctcaaatgaccttttctgatttttaatataggatcatcaaatgatggagaaatccatcaaatctctctttgttgactaggaatgctcaattgaacatatttgacgcttcagcgatgccaattgagatattctgtacatctcgaacttgctctaaatcaacgtaatatttatgttctttctttagGATCTGGAAAGATCTTTGCCTGGGGTTGGAACAAATATGGGCAG

Basic information

species Physcomitrella patens
transcript PP1S137_152V6.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162267886|gb|FC444487.1|FC444487
EST:     ATCATGTGTGGAAGTTGCATGCGGTGCGCGCCACAGTGCTGTGTTAACAG                         GATCTGGAAAGATCTTTGCCTGGGGTTGGAACAAATATGGGCAG
genomic: ATCATGTGTGGAAGTTGCATGCGGTGCGCGCCACAGTGCTGTGTTAACAGgtattctcaa ... ctttctttagGATCTGGAAAGATCTTTGCCTGGGGTTGGAACAAATATGGGCAG
EST: gi|162267885|gb|FC444486.1|FC444486
EST:     ATCATGTGTGGAAGTTGCATGCGGTGCGCGCCACAGTGCTGTGTTAACAG                         GATCTGGAAAGATCTTTGCCTGGGGTTGGAACAAATATGGGCAG
genomic: ATCATGTGTGGAAGTTGCATGCGGTGCGCGCCACAGTGCTGTGTTAACAGgtattctcaa ... ctttctttagGATCTGGAAAGATCTTTGCCTGGGGTTGGAACAAATATGGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtacatctcgaacttgctctaaatcaacgtaatatttatgttctttctttagGATCTGGAAAGATCTTTGCCTGGGGTTGGAACAAATATGGGCAG
                   ctctaaa  putative branch site (score: 3)
                                     tttatgttctttcttt  putative PPT
                                taatatttatgttctt  TA-rich tract