1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cattttgatatttcatatcacaagttcggcgtcttttcgaacagacaagtagtgaatcttgttgtgaatactctaaatctgcgctgtggacttattgcagGACATTGAGAGGGAAAAGAGGAGGGCAGAGAATCCTGAAGCCATGGAAGAAGATGTAGTGGAAGAACCTGCTCAGATTAAAGCACGCCACTTCGAGGAAT
species | Physcomitrella patens |
transcript | PP1S133_13V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAATTTGTCAACGTGCTTCCAAGTACGCTATTCGTGAAGATATTGAGAAG GACATTGAGAGGGAAAAGAGGAGGGCAGAGAATCCTGAAGCCATGGAAGAAEST: gi|67692525|gb|BJ952758.1|BJ952758
genomic: AAATTTGTCAACGTGCTTCCAAGTACGCTATTCGTGAAGATATTGAGAAGgttagttcct ... cttattgcagGACATTGAGAGGGAAAAGAGGAGGGCAGAGAATCCTGAAGCCATGGAAGAA
EST: AAATTTGTCAACGTGCTTCCAAGTACGCTATTCGTGAAGATATTGAGAAG GACATTGAGAGGGAAAAGAGGAGGGCAGAGAATCCTGAAGCCATGGAAGAAEST: gi|162259430|gb|FC434941.1|FC434941
genomic: AAATTTGTCAACGTGCTTCCAAGTACGCTATTCGTGAAGATATTGAGAAGgttagttcct ... cttattgcagGACATTGAGAGGGAAAAGAGGAGGGCAGAGAATCCTGAAGCCATGGAAGAA
EST: AAATTTGTCAACGTGCTTCCAAGTACGCTATTCGTGAAGATATTGAGAAG GACATTGAGAGGGAAAAGAGGAGGGCAGAGAATCCTGAAGCCATGGAAGAAEST: gi|22131790|gb|BQ826803.1|BQ826803
genomic: AAATTTGTCAACGTGCTTCCAAGTACGCTATTCGTGAAGATATTGAGAAGgttagttcct ... cttattgcagGACATTGAGAGGGAAAAGAGGAGGGCAGAGAATCCTGAAGCCATGGAAGAA
EST: AAATTTGTCAACGTGCTTCCAAGTACGCTATTCGTGAAGATATTGAGAAG GACATTGAGAGGGAAAAGAGGAGGGCAGAGAATCCTGAAGCCATGGAAGAAEST: gi|162159529|gb|FC336318.1|FC336318
genomic: AAATTTGTCAACGTGCTTCCAAGTACGCTATTCGTGAAGATATTGAGAAGgttagttcct ... cttattgcagGACATTGAGAGGGAAAAGAGGAGGGCAGAGAATCCTGAAGCCATGGAAGAA
EST: TCAACGTGGTTCCAACTCCCCTATTCGTGACGATTTTGGGAAG GCCATTGAGAGGGAAAAGAGGAGGGCAGAGAATCCCGAAGCCATGGAAGAAEST: gi|22492152|gb|BU052068.1|BU052068
genomic: TCAACGTGCTTCCAAGTACGCTATTCGTGAAGATATTGAGAAGgttagttcct ... cttattgcagGACATTGAGAGGGAAAAGAGGAGGGCAGAGAATCCTGAAGCCATGGAAGAA
EST: AAATTTGTCAACGTGCTTCCAAGTACGCTATTCGTGAAGATATTGAGAAG GACATTGAGAGGGAAAAGAGGAGGGCAGAGAATCCTGAAGCCATGGAAGAA
genomic: AAATTTGTCAACGTGCTTCCAAGTACGCTATTCGTGAAGATATTGAGAAGgttagttcct ... cttattgcagGACATTGAGAGGGAAAAGAGGAGGGCAGAGAATCCTGAAGCCATGGAAGAA
caagtagtgaatcttgttgtgaatactctaaatctgcgctgtggacttattgcagGACATTGAGAGGGAAAAGAGGAGGGCAGAGAATCCTGAAGCCATGGAAGAAGATGTAGTGGAAGAACCTGCTCAGATTAAAGCACGCCACTTCGAGGAAT
ctctaaa putative branch site (score: 3)
tctaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattttgatatttcatatcacaagttcggcgtcttttcgaacagacaagtagtgaatcttgttgtgaatactctaaatctgcgctgtggacttattgcagGACATTGAGAGGGAAAAGAGGAGGGCAGAGAATCCTGAAGCCATGGAAGAAGATGTAGTGGAAGAACCTGCTCAGATTAAAGCACGCCACTTCGAGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC