1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cccaacccttaatgcttctctctttgattcccttactcttttccgttctcttttctgggctcgactgagatgagtaaattgtgcctcttcgtttttgcagCTAGATTGTTTCGAAATTTATGCACTGGTTCCCGGGCTAGCTCGTGAGGAG
species | Physcomitrella patens |
transcript | PP1S131_109V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGACGAGGGCCCTAAAGCTGATTGGGTCAAAATCAATGTACATAAACAT CTAGATTGTTTCGAAATTTATGCACTGGTTCCCGGGCTAGCTCGTGAGGAGEST: gi|37829835|gb|BJ587847.1|BJ587847
genomic: TTGACGAGGGCCCTAAAGCTGATTGGGTCAAAATCAATGTACATAAACATgtgagttacc ... gtttttgcagCTAGATTGTTTCGAAATTTATGCACTGGTTCCCGGGCTAGCTCGTGAGGAG
EST: TTGACGAGGGCCCTAAAGCTGATTGGGTCAAAATCAATGTACATAAACAT NTAGATTGTTTCGAAATTTATGCACTGGTTCCCGGGCTAGCTCGTGAGGAGEST: gi|162198158|gb|FC372575.1|FC372575
genomic: TTGACGAGGGCCCTAAAGCTGATTGGGTCAAAATCAATGTACATAAACATgtgagttacc ... gtttttgcagCTAGATTGTTTCGAAATTTATGCACTGGTTCCCGGGCTAGCTCGTGAGGAG
EST: TTGACGAGGGCCCTAAAGCTGATTGGGTCAAAATCAATGTACATAAACAT CTAGATTGTTTCGAAATTTATGCACTGGTTCCCGGGCTAGCTCGTGAGGAGEST: gi|162158731|gb|FC335579.1|FC335579
genomic: TTGACGAGGGCCCTAAAGCTGATTGGGTCAAAATCAATGTACATAAACATgtgagttacc ... gtttttgcagCTAGATTGTTTCGAAATTTATGCACTGGTTCCCGGGCTAGCTCGTGAGGAG
EST: TTGACGAGGGCCCTAAAGCTGATTGGGTCAAAATCAATGTACATAAACAT CTAGATTGTTTCGAAATTTATGCACTGGTTCCCGGGCTAGCTCGTGAGGAGEST: gi|162151296|gb|FC327737.1|FC327737
genomic: TTGACGAGGGCCCTAAAGCTGATTGGGTCAAAATCAATGTACATAAACATgtgagttacc ... gtttttgcagCTAGATTGTTTCGAAATTTATGCACTGGTTCCCGGGCTAGCTCGTGAGGAG
EST: TTGACGAGGGCCCTAAAGCTGATTGGGTCAAAATCAATGTACATAAACAT CTAGATTGTTTCGAAATTTATGCACTGGTTCCCGGGCTAGCTCGTGAGGAGEST: gi|162151297|gb|FC327738.1|FC327738
genomic: TTGACGAGGGCCCTAAAGCTGATTGGGTCAAAATCAATGTACATAAACATgtgagttacc ... gtttttgcagCTAGATTGTTTCGAAATTTATGCACTGGTTCCCGGGCTAGCTCGTGAGGAG
EST: TTGACGAGGGCCCTAAAGCTGATTGGGTCAAAATCAATGTACATAAACAT CTAGATTGTTTCGAAATTTATGCACTGGTTCCCGGGCTAGCTCGTGAGGAGEST: gi|162198157|gb|FC372574.1|FC372574
genomic: TTGACGAGGGCCCTAAAGCTGATTGGGTCAAAATCAATGTACATAAACATgtgagttacc ... gtttttgcagCTAGATTGTTTCGAAATTTATGCACTGGTTCCCGGGCTAGCTCGTGAGGAG
EST: TTGACGAGGGCCCTAAAGCTGATTGGGTCAAAATCAATGTACATAAACAT CTAGATTGTTTCGAAATTTATGCACTGGTTCCCGGGCTAGCTCGTGAGGAG
genomic: TTGACGAGGGCCCTAAAGCTGATTGGGTCAAAATCAATGTACATAAACATgtgagttacc ... gtttttgcagCTAGATTGTTTCGAAATTTATGCACTGGTTCCCGGGCTAGCTCGTGAGGAG
ttctcttttctgggctcgactgagatgagtaaattgtgcctcttcgtttttgcagCTAGATTGTTTCGAAATTTATGCACTGGTTCCCGGGCTAGCTCGTGAGGAG
tgcctcttcgttttt CT-rich tract
agtaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccaacccttaatgcttctctctttgattcccttactcttttccgttctcttttctgggctcgactgagatgagtaaattgtgcctcttcgtttttgcagCTAGATTGTTTCGAAATTTATGCACTGGTTCCCGGGCTAGCTCGTGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG