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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcgccgggctgaaggattttaaattttacacacatgcattgtatcatctgaaaatggcatattgacctgttctgatacttaattcttatggctcatgcagTCAACAAGATGGCTTCTCTACACTGAACAGGCCCCTTCGGCTTGGTTTCATTTTGCTCTTTGTGGGCTGGTTGGTATTGTTACTGCATACGTTTTTGTTT

Basic information

species Physcomitrella patens
transcript PP1S105_42V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162189733|gb|FC366787.1|FC366787
EST:     AGAAAGGATACTCTGTCACGCTCTTCTTAGCGGTGTTAGCTTTTGGAGGA                         TCAACAAGATGGCTTCTCTACACTGAACAGGCCCCTTCGGCTTGGTTTCAT
genomic: AGAAAGGATACTCTGTCACGCTCTTCTTAGCGGTGTTAGCTTTTGGAGGAgtgagtactc ... gctcatgcagTCAACAAGATGGCTTCTCTACACTGAACAGGCCCCTTCGGCTTGGTTTCAT
EST: gi|162256270|gb|FC432176.1|FC432176
EST:     AGAAAGGATACTCTGTCACGCTCTTCTTAGCGGTGTTAGCTTTTGGAGGA                         TCAACAAGATGGCTTCTCTACACTGAACAGGCCCCTTCGGCTTGGTTTCAT
genomic: AGAAAGGATACTCTGTCACGCTCTTCTTAGCGGTGTTAGCTTTTGGAGGAgtgagtactc ... gctcatgcagTCAACAAGATGGCTTCTCTACACTGAACAGGCCCCTTCGGCTTGGTTTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctgaaaatggcatattgacctgttctgatacttaattcttatggctcatgcagTCAACAAGATGGCTTCTCTACACTGAACAGGCCCCTTCGGCTTGGTTTCATTTTGCTCTTTGTGGGCTGGTTGGTATTGTTACTGCATACGTTTTTGTTT
                             atacttaattcttat  TA-rich tract