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gtaaaatcttgaccctagaagctttactgttctatatttgcacatcataaactctgctgggagacgtggccaacatttgcgagaagtttctataattaatacgaatcacttcgcactttctgagttgcacatcctagggggtctggtgcagGTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTGGTGGTGGGAGTTGGCGCAAGGCCACTTCTGGCTCCTCTGAAGGGTTTGA
species | Physcomitrella patens |
transcript | PP1S90_28V6.4 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCATCAAGGGAACAACTGTAACTGCA-TTGAGAAAGATGACAATGGCCAC GTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTGEST: gi|162178357|gb|FC355179.1|FC355179
genomic: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCACgtaaaatctt ... tctggtgcagGTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTG
EST: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCAC GTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTGEST: gi|162278698|gb|FC454808.1|FC454808
genomic: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCACgtaaaatctt ... tctggtgcagGTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTG
EST: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCAC GTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTGEST: gi|162181159|gb|FC357604.1|FC357604
genomic: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCACgtaaaatctt ... tctggtgcagGTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTG
EST: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCAC GTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTGEST: gi|162221160|gb|FC397801.1|FC397801
genomic: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCACgtaaaatctt ... tctggtgcagGTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTG
EST: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCAC GTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTGEST: gi|162225064|gb|FC401688.1|FC401688
genomic: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCACgtaaaatctt ... tctggtgcagGTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTG
EST: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCAC GTATCTNAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTGEST: gi|208387453|gb|DC949238.1|DC949238
genomic: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCACgtaaaatctt ... tctggtgcagGTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTG
EST: TCAA-GGAACAACTGTAACTGC-NTTGAGAAAGATGACAATGGCCAC GTATTTAAAGTNTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTGEST: gi|208392192|gb|DC957271.1|DC957271
genomic: TCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCACgtaaaatctt ... tctggtgcagGTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTG
EST: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCAC GTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTGEST: gi|162178358|gb|FC355180.1|FC355180
genomic: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCACgtaaaatctt ... tctggtgcagGTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTG
EST: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCAC GTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTGEST: gi|162237033|gb|FC413192.1|FC413192
genomic: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCACgtaaaatctt ... tctggtgcagGTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTG
EST: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCAC GTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTGEST: gi|208378994|gb|DC922840.1|DC922840
genomic: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCACgtaaaatctt ... tctggtgcagGTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTG
EST: CAAGGGAANCAACTGTAACTGCATTTGAGAAAGATGACAATGGCCAC GTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTGEST: gi|162221161|gb|FC397802.1|FC397802
genomic: CAAGGGAA-CAACTGTAACTGCATTTGAGAAAGATGACAATGGCCACgtaaaatctt ... tctggtgcagGTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTG
EST: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCAC GTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTGEST: gi|100418007|gb|BY993291.1|BY993291
genomic: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCACgtaaaatctt ... tctggtgcagGTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTG
EST: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCAC GTATCTTAGGTCTTATTGAAAAACGGAAGCTC
genomic: TCATCAAGGGAACAACTGTAACTGCATTTGAGAAAGATGACAATGGCCACgtaaaatctt ... tctggtgcagGTATCTAAAGTCTTATTGAAAAACGGAAGCTC
taatacgaatcacttcgcactttctgagttgcacatcctagggggtctggtgcagGTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTGGTGGTGGGAGTTGGCGCAAGGCCACTTCTGGCTCCTCTGAAGGGTTTGA
aattaat putative branch site (score: 55)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatcttgaccctagaagctttactgttctatatttgcacatcataaactctgctgggagacgtggccaacatttgcgagaagtttctataattaatacgaatcacttcgcactttctgagttgcacatcctagggggtctggtgcagGTATCTAAAGTCTTATTGAAAAACGGAAGCTCTGTGAACAGCACTTTTGTGGTGGTGGGAGTTGGCGCAAGGCCACTTCTGGCTCCTCTGAAGGGTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG