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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagactcttaccaaattgagtcaatatgttttttgacataagcttcaagtacctgttctgaacagaatagtgattctacaaactgaattgtgtggagaatgatcttcagaatcacaacaagtttcatatgcaagccctataaaagtatgagggggttgtttcttgttgacagTGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATGAGGGTAAAGGCGTAAACATCATCAAGGGAACAACTGTAACTGCATTTGA

Basic information

species Physcomitrella patens
transcript PP1S90_28V6.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162158960|gb|FC334820.1|FC334820
EST:     GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGA                         TGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
genomic: GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGAgtaagactct ... ttgttgacagTGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
EST: gi|100363976|gb|BY966264.1|BY966264
EST:     ACGATGAAACA-GACTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGA                         TGCCTCGTTTG
genomic: ACGATGAA-CAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGAgtaagactct ... ttgttgacagTGCCTCGTTTG
EST: gi|162278698|gb|FC454808.1|FC454808
EST:     GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGA                         TGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
genomic: GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGAgtaagactct ... ttgttgacagTGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
EST: gi|100375395|gb|BY948855.1|BY948855
EST:     CGATGAAACA-GATTTAAAGTCA-CATGGTGTTCCCAGAAACATGCTTGA                         TGCCTCGTTTGTTNACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
genomic: CGATGAA-CAAGATT-AAAGTCAACATGGTGTTCCCAGAACCATGCTTGAgtaagactct ... ttgttgacagTGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
EST: gi|208361425|gb|DC935112.1|DC935112
EST:     GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGA                         TGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
genomic: GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGAgtaagactct ... ttgttgacagTGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
EST: gi|162181159|gb|FC357604.1|FC357604
EST:     GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGA                         TGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
genomic: GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGAgtaagactct ... ttgttgacagTGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
EST: gi|100391837|gb|BY989572.1|BY989572
EST:     GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGA                         TGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
genomic: GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGAgtaagactct ... ttgttgacagTGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
EST: gi|162225064|gb|FC401688.1|FC401688
EST:     GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGA                         TGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
genomic: GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGAgtaagactct ... ttgttgacagTGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
EST: gi|100378191|gb|BY949726.1|BY949726
EST:     CGATGAAACA-GATTNAAAGTCA-CATGGTGTTCCCAGAACCATGCTTGA                         TGCCTCGTTTGTTTTACACC-GAACTTTGC-TCATTTTACGAGAGATACTA
genomic: CGATGAA-CAAGATT-AAAGTCAACATGGTGTTCCCAGAACCATGCTTGAgtaagactct ... ttgttgacagTGCCTCGTTTGTTT-ACACCCGAACTT-GCCTCATTTTACGAGAGATACTA
EST: gi|208392192|gb|DC957271.1|DC957271
EST:     GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGA                         TGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
genomic: GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGAgtaagactct ... ttgttgacagTGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
EST: gi|162178358|gb|FC355180.1|FC355180
EST:     GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGA                         TGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
genomic: GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGAgtaagactct ... ttgttgacagTGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
EST: gi|100390201|gb|BY952609.1|BY952609
EST:     ACGATGAACCAGATTTAAGTCA-CATGGTGTTTCCCAGAAC-ATGCTTGA                         TGCCTCGTTTGTTTACACCCGAACTTGCTTCATTTTACGAGA
genomic: ACGATGAACAAGATTAAAGTCAACATGGTGTT-CCCAGAACCATGCTTGAgtaagactct ... ttgttgacagTGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGA
EST: gi|208385252|gb|DC915052.1|DC915052
EST:     GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGA                         TGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACNAGAGATACTATG
genomic: GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGAgtaagactct ... ttgttgacagTGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
EST: gi|162237033|gb|FC413192.1|FC413192
EST:     GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGA                         TGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
genomic: GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGAgtaagactct ... ttgttgacagTGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
EST: gi|162221161|gb|FC397802.1|FC397802
EST:     GATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGA                         TGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
genomic: GATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGAgtaagactct ... ttgttgacagTGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
EST: gi|100418007|gb|BY993291.1|BY993291
EST:     GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGA                         TGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
genomic: GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGAgtaagactct ... ttgttgacagTGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
EST: gi|208375453|gb|DC936996.1|DC936996
EST:     GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGA                         TGCCTCGTTTGTTNACACCCGAACTTGCCTCATTTTACGAGAGATACTATG
genomic: GACGATGAACAAGATTAAAGTCAACATGGTGTTCCCAGAACCATGCTTGAgtaagactct ... ttgttgacagTGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagtttcatatgcaagccctataaaagtatgagggggttgtttcttgttgacagTGCCTCGTTTGTTTACACCCGAACTTGCCTCATTTTACGAGAGATACTATGAGGGTAAAGGCGTAAACATCATCAAGGGAACAACTGTAACTGCATTTGA
                                      ttgtttctt  CT-rich tract
                    tataaaagtat  TA-rich tract