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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgactcttttcttacaacgtattagatacgaaatgcatattctggattttagttggttagaacatcttttgattgtttttgctcttggcgtgctataatgctggtgccttttgtgctgaccactgttgatctttttgtggcagGCTGATCAGAAGTTAAGAGTGTGTGATATTTGCGGGGCATTTTTGAGCATCTATGACAG

Basic information

species Physcomitrella patens
transcript PP1S88_36V6.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208356042|gb|DC957286.1|DC957286
EST:     CTCCTGAAGTTCGCATT                         GCTGATCAGAAGTTAAGAGTGTGTGATATTTGCGGGGCATTTTTGAGCATC
genomic: CTCCTGAAGTTCGCATTgtgggtgact ... tttgtggcagGCTGATCAGAAGTTAAGAGTGTGTGATATTTGCGGGGCATTTTTGAGCATC
EST: gi|162204260|gb|FC379733.1|FC379733
EST:     AAGAGGCGGTTACTGACCCCGCTAAGCTACTAGCTCCTGAAGTTCGCATT                         GCTGATCAGAAGTTAAGAGTGTGTGATATTTGCGGGGCATTTTTGAGCATC
genomic: AAGAGGCGGTTACTGACCCCGCTAAGCTACTAGCTCCTGAAGTTCGCATTgtgggtgact ... tttgtggcagGCTGATCAGAAGTTAAGAGTGTGTGATATTTGCGGGGCATTTTTGAGCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgctataatgctggtgccttttgtgctgaccactgttgatctttttgtggcagGCTGATCAGAAGTTAAGAGTGTGTGATATTTGCGGGGCATTTTTGAGCATCTATGACAG
                                         tctttttgt  CT-rich tract
                                        atcttttt  TA-rich tract