1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacaagaatgatggaggtggtggtggagccaccagatttttgtttgttctcgtgctttggtggcgaacgagcagtcgtgggtggttgggttgattgaaaactgagcgttgtggatttgacgtgatgtatcagGTCGAATTTGATGAGATGGGTCAAGTGATGGGAGTTACATCTGAGGGTGAGACGGCGAAGGCTAAGAAAGTCGTGTGCGACCCGTCATACCTGCCGAATA
species | Physcomitrella patens |
transcript | PP1S85_191V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGTGCAGTGTACGGAGGAANNTACATGCCTT-NCAAACCGGAGTGCAAG GTCGAATTTGATGAGATGGGTCAAGTGATGGGAGTTACATCTGAGGGTGAGEST: gi|162209168|gb|FC385387.1|FC385387
genomic: GAGTGCAGTGTACGGAGGAACTTACATG-CTTGCCAAACCGGAGTGCAAGgtacaagaat ... gatgtatcagGTCGAATTTGATGAGATGGGTCAAGTGATGGGAGTTACATCTGAGGGTGAG
EST: TGAGTGCAGTGTACGGAGGAACTTACATGCTTGCCAAACCGGAGTGCAAG GTCGAATTTGATGAGATGGGTCAAGTGATGGGAGTTACATCTGAGGGTGAGEST: gi|162209169|gb|FC385388.1|FC385388
genomic: TGAGTGCAGTGTACGGAGGAACTTACATGCTTGCCAAACCGGAGTGCAAGgtacaagaat ... gatgtatcagGTCGAATTTGATGAGATGGGTCAAGTGATGGGAGTTACATCTGAGGGTGAG
EST: TGAGTGCAGTGTACGGAGGAACTTACATGCTTGCCAAACCGGAGTGCAAG GTCGAATTTGATGAGATGGGTCAAGTGATGGGAGTTACATCTGAGGGTGAGEST: gi|208398358|gb|DC924712.1|DC924712
genomic: TGAGTGCAGTGTACGGAGGAACTTACATGCTTGCCAAACCGGAGTGCAAGgtacaagaat ... gatgtatcagGTCGAATTTGATGAGATGGGTCAAGTGATGGGAGTTACATCTGAGGGTGAG
EST: TGAGTGCAGTGTACGGAGGAACTTACATGCTTGCCCAACCGGAGTGCAAG GTCGAATTTGATGAGATGGGTCAAGTGATGGGAGTTACATNTGAGGGTGAGEST: gi|208372519|gb|DC948745.1|DC948745
genomic: TGAGTGCAGTGTACGGAGGAACTTACATGCTTGCCAAACCGGAGTGCAAGgtacaagaat ... gatgtatcagGTCGAATTTGATGAGATGGGTCAAGTGATGGGAGTTACATCTGAGGGTGAG
EST: TGAGTGCAGTGTACGGAGGAACTTACATGCTTGCCAAACCGGAGTGCAAG GTCGAANTTGATGAGATGGGTCAAGTGATGGGAGTTACATCTGAGGGTGAGEST: gi|208375125|gb|DC956465.1|DC956465
genomic: TGAGTGCAGTGTACGGAGGAACTTACATGCTTGCCAAACCGGAGTGCAAGgtacaagaat ... gatgtatcagGTCGAATTTGATGAGATGGGTCAAGTGATGGGAGTTACATCTGAGGGTGAG
EST: TGAGTGCAGTGTACGGAGGAACTTACATGCTTGCCAAACCGGAGTGCAAG GTCGAATTTGATGAGATGGGTCAAGTGATGGGAGTTACATCTGAGGGTGAG
genomic: TGAGTGCAGTGTACGGAGGAACTTACATGCTTGCCAAACCGGAGTGCAAGgtacaagaat ... gatgtatcagGTCGAATTTGATGAGATGGGTCAAGTGATGGGAGTTACATCTGAGGGTGAG
tgggtggttgggttgattgaaaactgagcgttgtggatttgacgtgatgtatcagGTCGAATTTGATGAGATGGGTCAAGTGATGGGAGTTACATCTGAGGGTGAGACGGCGAAGGCTAAGAAAGTCGTGTGCGACCCGTCATACCTGCCGAATA
atttgac putative branch site (score: 14)
attgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaagaatgatggaggtggtggtggagccaccagatttttgtttgttctcgtgctttggtggcgaacgagcagtcgtgggtggttgggttgattgaaaactgagcgttgtggatttgacgtgatgtatcagGTCGAATTTGATGAGATGGGTCAAGTGATGGGAGTTACATCTGAGGGTGAGACGGCGAAGGCTAAGAAAGTCGTGTGCGACCCGTCATACCTGCCGAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA