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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgatgcggggacaggtacagaaaatgtgataacagtgtaaagtaggggcggtattgcattttgattgtgttttaacagcaatatacgtgctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGCGGTCAGTTTGTGCGGCAAGCGGTACATGATCCGTCTGCTGGTGACGCCG

Basic information

species Physcomitrella patens
transcript PP1S81_144V6.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S81_144V6.1 (Physcomitrella patens), 3'ss of exon 8
lower sequence: Vv15s0048g02540.t01 (Vitis vinifera), 3'ss of exon 8
atgatgcggggacaggtacagaaaatgtgataacagtgtaaagtaggggcggtattgcattttgattgtgttttaacagcaatatacgtgctttgat----cagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGCGGTCAGTTTGTGCGGCAAGCGGTACATGATCCGTCTGCTGGTGACGCCG
 | | ||  |||    |    ||  | || | | || |  || |     |     | |||   ||   ||||  ||  |    || |  | |||  |    ||||| |||||||||||||||||| |||||||||| ||  | || |||||    || |||||||| || |||| |     |||  |  |  | | ||| |   
gtta-gcttggattcatctccaagttttgctgatagcgccaaatttatacaaggatacat---gaagttgttccaattgtttaatgcaagttttcttaacacagGTTCGATACCAAAGCAGGAAAAGGCTTGCAGAGCAGCGTCCCCGAGTGAAAGGACAGTTTGTTCGACAAGTGCAGACTGACACTCCAACCGCTGATGGGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162184411|gb|FC359157.1|FC359157
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|67701201|gb|BJ961434.1|BJ961434
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162192757|gb|FC370128.1|FC370128
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162174418|gb|FC350489.1|FC350489
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|37829052|gb|BJ587064.1|BJ587064
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162165162|gb|FC341664.1|FC341664
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162168409|gb|FC344398.1|FC344398
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162181002|gb|FC358656.1|FC358656
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162158452|gb|FC334247.1|FC334247
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162158453|gb|FC334248.1|FC334248
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162197279|gb|FC372241.1|FC372241
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162255172|gb|FC431482.1|FC431482
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162217904|gb|FC393900.1|FC393900
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162168702|gb|FC343964.1|FC343964
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162155820|gb|FC331849.1|FC331849
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162277380|gb|FC453186.1|FC453186
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162195455|gb|FC369338.1|FC369338
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|37833903|gb|BJ591915.1|BJ591915
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162255171|gb|FC431481.1|FC431481
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162217903|gb|FC393899.1|FC393899
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162181001|gb|FC358655.1|FC358655
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|18341137|gb|BJ173170.1|BJ173170
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|18339432|gb|BJ171459.1|BJ171459
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162197638|gb|FC374472.1|FC374472
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162168703|gb|FC343965.1|FC343965
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162196871|gb|FC373289.1|FC373289
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162190513|gb|FC365735.1|FC365735
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162179139|gb|FC355604.1|FC355604
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162177447|gb|FC353708.1|FC353708
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|37851156|gb|BJ609164.1|BJ609164
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|162190512|gb|FC365734.1|FC365734
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|37831387|gb|BJ589399.1|BJ589399
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
EST: gi|37830727|gb|BJ588739.1|BJ588739
EST:     CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAG                         GTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC
genomic: CCTTGAATAAGTTTAGGCAGAAGAGAAAGGAGCGATGCTTTGAGAAGAAGgtacggacgg ... ctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggggcggtattgcattttgattgtgttttaacagcaatatacgtgctttgatcagGTGCGATACCAAAGCAGGAAACGGCTTGCAGAACAAAGACCACGAGTCCGCGGTCAGTTTGTGCGGCAAGCGGTACATGATCCGTCTGCTGGTGACGCCG
                         ttttaac  putative branch site (score: 2)
             attttgatt  TA-rich tract