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gtaagtatcttgaattttatgtctccatatattcaccctaggccaaatcgacaaggagtagaccactgacttaactcttgttgattgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG
species | Physcomitrella patens |
transcript | PP1S7_156V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGCEST: gi|208374183|gb|DC945229.1|DC945229
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA ATGGGGAAATGTTGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGCEST: gi|208371001|gb|DC944376.1|DC944376
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: GACATGCGT-GTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGCEST: gi|208362836|gb|DC950636.1|DC950636
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGCEST: gi|162270682|gb|FC446295.1|FC446295
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA ATGGGGAAATGTCGAGTTTCCTTTGCCTTTEST: gi|208384409|gb|DC928160.1|DC928160
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTT
EST: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGCEST: gi|162203672|gb|FC378547.1|FC378547
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: GTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGCEST: gi|208374459|gb|DC948435.1|DC948435
genomic: GTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAAAACANTCAGAA ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGCEST: gi|208366133|gb|DC955234.1|DC955234
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCNAGAACACTCAGAA ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGCEST: gi|162198094|gb|FC372121.1|FC372121
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGCEST: gi|67724921|gb|BJ975180.1|BJ975180
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: GACNTGCGTGGTGAACTGGATGACACTGC-TTATTCAAGAACACTCAGAA ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGCEST: gi|208379626|gb|DC927123.1|DC927123
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGCEST: gi|208386150|gb|DC949061.1|DC949061
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: GACATGCGTGGTGAACTGGATGACANTGCTTT-TTCAAGAACANTCAGAA ATGGGGAAATGTCGAGTTTCCTTTGCCTTTNGGCAGGACAATGAGTCCGGCEST: gi|208364385|gb|DC950686.1|DC950686
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: GACAGGCNTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGCEST: gi|37851290|gb|BJ609298.1|BJ609298
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGANCACTCAGAA ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGCEST: gi|208370928|gb|DC944303.1|DC944303
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGCEST: gi|67725040|gb|BJ975299.1|BJ975299
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA ATGGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGEST: gi|208364465|gb|DC958034.1|DC958034
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagAT-GGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGG
EST: GACATGCGTGGTGAACTGGATGACATTGCTTTATTCAAGAACACTCAGAA ATGGGGAAATGTCGAGTTTCCTNTGCCTTTTGGCANGACAATGAGTCCGGCEST: gi|100384726|gb|BY950716.1|BY950716
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: GACATGCCTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA ATGGGGAAATGTCGGGTTTCCTTTGCCTEST: gi|208354287|gb|DC957465.1|DC957465
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCT
EST: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGCEST: gi|208360305|gb|DC950250.1|DC950250
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: GACATGCGT-GTGAACTGGATGACACTGCTTTATTCNAGNACACTCAGAA ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCNGGEST: gi|208379943|gb|DC927669.1|DC927669
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCC-GG
EST: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAA ATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGCEST: gi|100355867|gb|BY946078.1|BY946078
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGC
EST: GACATGCGTGGGGAACTGGATGACACTGCTTTATTCAAGAACACTCAAAA AGGGGGAAATG
genomic: GACATGCGTGGTGAACTGGATGACACTGCTTTATTCAAGAACACTCAGAAgtaagtatct ... ttgtgtacagATGGGGAAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatcttgaattttatgtctccatatattcaccctaggccaaatcgacaaggagtagaccactgacttaactcttgttgattgtgtacagATGGGGAAATGTCGAGTTTCCTTTGCCTTTTGGCAGGACAATGAGTCCGGCTGAGGAGAAAATTCACCGCATGGATGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA