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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctggatttcaagaacgttcaagtattttttacatgaggttgttgtgtgcgctaaaatcaaactgtagcttctaatttagcttgtggtggactggaacagTGGTTGTTGGCTTATTATTCAACACAAGTAATGCTGGTGATATTTTTGCTGGTGATATCCTTGCTACTTATGGGATTTTTTGGTTATCATCTGTCCCTTG

Basic information

species Physcomitrella patens
transcript PP1S78_8V6.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208385167|gb|DC923561.1|DC923561
EST:     ACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTCAG                         TGGTTGTTGGCTTATTATTCAACACAAGTAATGCTGGTGATATTTTTGCTG
genomic: ACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTCAGgtctgttttg ... actggaacagTGGTTGTTGGCTTATTATTCAACACAAGTAATGCTGGTGATATTTTTGCTG
EST: gi|162167446|gb|FC343149.1|FC343149
EST:     ACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTCAG                         TGGTTGTTGGCTTATTATTCAACACAAGTAATGCTGGTGATATTTTTGCTG
genomic: ACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTCAGgtctgttttg ... actggaacagTGGTTGTTGGCTTATTATTCAACACAAGTAATGCTGGTGATATTTTTGCTG
EST: gi|208390790|gb|DC938383.1|DC938383
EST:     ACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTCAG                         TGGTTGTTGGCTTATTATTCAACACAAGTAATGCTGGTGATATTTTTGCTG
genomic: ACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTCAGgtctgttttg ... actggaacagTGGTTGTTGGCTTATTATTCAACACAAGTAATGCTGGTGATATTTTTGCTG
EST: gi|208373870|gb|DC956344.1|DC956344
EST:     ACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTCAG                         TGGTTGTTGGCTTATTATTCAACACAAGTAATGCTGGTGATATTTTTGCTG
genomic: ACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTCAGgtctgttttg ... actggaacagTGGTTGTTGGCTTATTATTCAACACAAGTAATGCTGGTGATATTTTTGCTG
EST: gi|208366945|gb|DC951432.1|DC951432
EST:     ACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTCAN                         NNGCTGTTGGCTTATTATTCAACACAAGTAATGCTGGTGATATTTTTGCTG
genomic: ACATTGGTCGGCCTGCAACATTCCATGACATATATCCGCATGTCTTTCAGgtctgttttg ... actggaacagTGGTTGTTGGCTTATTATTCAACACAAGTAATGCTGGTGATATTTTTGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgcgctaaaatcaaactgtagcttctaatttagcttgtggtggactggaacagTGGTTGTTGGCTTATTATTCAACACAAGTAATGCTGGTGATATTTTTGCTGGTGATATCCTTGCTACTTATGGGATTTTTTGGTTATCATCTGTCCCTTG
                        ttctaat  putative branch site (score: 2)
       taaaatcaaa  TA-rich tract