1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...attgcatattttcgtgcataacacttgtcttagattatgatctcttatttctggtcgtagatcactgggcctatcctaaacttgtcaatttaacttgcagAGAGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGCCATTCAGTGCTTGCCTATGAGAGCACGCTGAAGGGAATCAGAAAACTGC
species | Physcomitrella patens |
transcript | PP1S78_3V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACGCCGCCATGGCTCATCTGAGTTCAAAGCTTCCAATTTCCCGTTGGCAG AGAGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGCEST: gi|162231111|gb|FC406222.1|FC406222
genomic: ACGCCGCCATGGCTCATCTGAGTTCAAAGCTTCCAATTTCCCGTTGGCAGgtatttatga ... taacttgcagAGAGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGC
EST: ACGCCGCCATGGCTCATCTGAGTTCAAAGCTTCCAATTTCCCGTTGGCAG AGAGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGCEST: gi|162167458|gb|FC343668.1|FC343668
genomic: ACGCCGCCATGGCTCATCTGAGTTCAAAGCTTCCAATTTCCCGTTGGCAGgtatttatga ... taacttgcagAGAGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGC
EST: ACGCCGCCATGGCTCATCTGAGTTCAAAGCTTCCAATTTCCCGTTGGCAG AGAGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGCEST: gi|162195993|gb|FC372684.1|FC372684
genomic: ACGCCGCCATGGCTCATCTGAGTTCAAAGCTTCCAATTTCCCGTTGGCAGgtatttatga ... taacttgcagAGAGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGC
EST: ACGCCGCCATGGCTCATCTGAGTTCAAAGCTTCCAATTTCCCGTTGGCAG AGAGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGC
genomic: ACGCCGCCATGGCTCATCTGAGTTCAAAGCTTCCAATTTCCCGTTGGCAGgtatttatga ... taacttgcagAGAGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGC
tatttctggtcgtagatcactgggcctatcctaaacttgtcaatttaacttgcagAGAGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGCCATTCAGTGCTTGCCTATGAGAGCACGCTGAAGGGAATCAGAAAACTGC
aatttaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgcatattttcgtgcataacacttgtcttagattatgatctcttatttctggtcgtagatcactgggcctatcctaaacttgtcaatttaacttgcagAGAGATTTGACCGACTCAACTGTGCTCCGCAATCTTGGTGTTGGACTTGGCCATTCAGTGCTTGCCTATGAGAGCACGCTGAAGGGAATCAGAAAACTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG