1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cactatctgtatcaagaatgtacattgcattttgatccatcacagagcatcaaaactgcacctgacttgttttccatgtatgtggatttgacgtgtgaagGGAATTTGCTCTTTGCAACTTGGCAGTTCACAACGATCATTGTGCAGTGGATCGTGAGATGTTAGAGAGGGAAGCAGTGCTGGTATGAGGATCCTGCAAT
species | Physcomitrella patens |
transcript | PP1S78_17V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCTCAGCAACACTCTGAAGTCGGGGAAAAAGTAAACATACT GGAATTTGCTCTTTGCAACTTGGCAGTTCACAACGATCATTGTGCAGTGGAEST: gi|162248508|gb|FC423737.1|FC423737
genomic: GCTCAGCAACACTCTGAAGTCGGGGAAAAAGTAAACATACTgtaagtgtaa ... acgtgtgaagGGAATTTGCTCTTTGCAACTTGGCAGTTCACAACGATCATTGTGCAGTGGA
EST: GCTCAGCAACACTCTGAAGTCGGGGAAAAAGTAAACATACT GGAATTTGCTCTTTGCAACTTGGCAGTTCACAACGATCATTGTGCAGTGGAEST: gi|162238158|gb|FC418716.1|FC418716
genomic: GCTCAGCAACACTCTGAAGTCGGGGAAAAAGTAAACATACTgtaagtgtaa ... acgtgtgaagGGAATTTGCTCTTTGCAACTTGGCAGTTCACAACGATCATTGTGCAGTGGA
EST: GCTCAGCAACACTCTGAAGTCGGGGAAAAAGTAAACATACT GGAATTTGCTCTTTGCAACTTGGCAGTTCACAACGATCATTGTGCAGTGGA
genomic: GCTCAGCAACACTCTGAAGTCGGGGAAAAAGTAAACATACTgtaagtgtaa ... acgtgtgaagGGAATTTGCTCTTTGCAACTTGGCAGTTCACAACGATCATTGTGCAGTGGA
agcatcaaaactgcacctgacttgttttccatgtatgtggatttgacgtgtgaagGGAATTTGCTCTTTGCAACTTGGCAGTTCACAACGATCATTGTGCAGTGGATCGTGAGATGTTAGAGAGGGAAGCAGTGCTGGTATGAGGATCCTGCAAT
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactatctgtatcaagaatgtacattgcattttgatccatcacagagcatcaaaactgcacctgacttgttttccatgtatgtggatttgacgtgtgaagGGAATTTGCTCTTTGCAACTTGGCAGTTCACAACGATCATTGTGCAGTGGATCGTGAGATGTTAGAGAGGGAAGCAGTGCTGGTATGAGGATCCTGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcacc