1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtatcctatcttctatcaggatcgatggtcatccgatccttactgctattttggtttctttgtgttgatttctcgctatttgatttttatcttctagctttttaaaatactcacattttgcattcttctcgtcagCTTCGAGAATACATTGATGATACAGAGGATTACATCAACATACAG
species | Physcomitrella patens |
transcript | PP1S76_98V6.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCTTATTTTATGCAGATTGACAGCACTTTGAACAAGCTAACTACA CTTCGAGAATACATTGATGATACAGAGGATTACATCAACATACAGEST: gi|162193021|gb|FC371965.1|FC371965
genomic: GCTTATTTTATGCAGATTGACAGCACTTTGAACAAGCTAACTACAgtaagtatcc ... ttctcgtcagCTTCGAGAATACATTGATGATACAGAGGATTACATCAACATACAG
EST: GCTTATTTTATGCAGATTGACAGCACTTTGAACAAGCTAACTACA CTTCGAGAATACATTGATGATACAGAGGATTACATCAACATACAGEST: gi|67695098|gb|BJ955331.1|BJ955331
genomic: GCTTATTTTATGCAGATTGACAGCACTTTGAACAAGCTAACTACAgtaagtatcc ... ttctcgtcagCTTCGAGAATACATTGATGATACAGAGGATTACATCAACATACAG
EST: GCTTATTTTATGCAGATTGACAGCACTTTGAACAAGCTAACTACA CTTCGAGAATACATTGATGATACAGAGGATTACATCAACATACAGEST: gi|208361209|gb|DC957678.1|DC957678
genomic: GCTTATTTTATGCAGATTGACAGCACTTTGAACAAGCTAACTACAgtaagtatcc ... ttctcgtcagCTTCGAGAATACATTGATGATACAGAGGATTACATCAACATACAG
EST: GCTTATTTTATGCAGATTGACAGCACTTTGAACAAGCTAACTACA CTTCGAGAATACATTGATGATACAGAGGATTACATCAACATACAGEST: gi|67571727|gb|BJ944551.1|BJ944551
genomic: GCTTATTTTATGCAGATTGACAGCACTTTGAACAAGCTAACTACAgtaagtatcc ... ttctcgtcagCTTCGAGAATACATTGATGATACAGAGGATTACATCAACATACAG
EST: AGCACTTTGAACAAGCTAACTACA CTTCGAGAATACATTGATGATACAGAGGATTACATCAACATACNGEST: gi|18338616|gb|BJ170640.1|BJ170640
genomic: AGCACTTTGAACAAGCTAACTACAgtaagtatcc ... ttctcgtcagCTTCGAGAATACATTGATGATACAGAGGATTACATCAACATACAG
EST: GCTTATTTTATGCAGATTGACAGCACTTTGAACAAGCTAACTACA CTTCGAGAATACATTGATGATACAGAGGATTACATCAACATACAG
genomic: GCTTATTTTATGCAGATTGACAGCACTTTGAACAAGCTAACTACAgtaagtatcc ... ttctcgtcagCTTCGAGAATACATTGATGATACAGAGGATTACATCAACATACAG
tgatttttatcttctagctttttaaaatactcacattttgcattcttctcgtcagCTTCGAGAATACATTGATGATACAGAGGATTACATCAACATACAG
tactcac putative branch site (score: 1)
ttttgcattcttctc CT-rich tract
tttttaaaatactcac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatcctatcttctatcaggatcgatggtcatccgatccttactgctattttggtttctttgtgttgatttctcgctatttgatttttatcttctagctttttaaaatactcacattttgcattcttctcgtcagCTTCGAGAATACATTGATGATACAGAGGATTACATCAACATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT