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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttttgtattgttttcaagtagttaaattgcacaatacttcgctgtcccaaatgtcattcagatgtttgagatgttgaactcaggtatctgtttaatggcatttaaggctgcactaattgtcgaatttctcctctgcttgtgtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC

Basic information

species Physcomitrella patens
transcript PP1S74_140V6.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208376489|gb|DC922520.1|DC922520
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208364850|gb|DC957887.1|DC957887
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208372243|gb|DC948046.1|DC948046
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|162162985|gb|FC338167.1|FC338167
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGANAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208356591|gb|DC922381.1|DC922381
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|37839167|gb|BJ597175.1|BJ597175
EST:     CACCGGAATNTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATNTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208383807|gb|DC928082.1|DC928082
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208386389|gb|DC937056.1|DC937056
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTANCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208370737|gb|DC936859.1|DC936859
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTA
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTA
EST: gi|208372953|gb|DC940584.1|DC940584
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGC-AGTTCTT
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTT
EST: gi|208345159|gb|DC925457.1|DC925457
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208391627|gb|DC938240.1|DC938240
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTANCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208360344|gb|DC930753.1|DC930753
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTANCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|162175919|gb|FC351597.1|FC351597
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGANAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|162227965|gb|FC404585.1|FC404585
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|162163035|gb|FC338425.1|FC338425
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208349412|gb|DC910429.1|DC910429
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTA
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTA
EST: gi|208376730|gb|DC902925.1|DC902925
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTAAGCCGCTCCGTTCATCTGCNAGTTCTTTANG-AC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208388767|gb|DC941776.1|DC941776
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|37843958|gb|BJ601966.1|BJ601966
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208362330|gb|DC954576.1|DC954576
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208347730|gb|DC925603.1|DC925603
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208400413|gb|DC908640.1|DC908640
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCG
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCG
EST: gi|162160597|gb|FC337172.1|FC337172
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208354863|gb|DC934367.1|DC934367
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTANCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|162227966|gb|FC404586.1|FC404586
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGANAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208386871|gb|DC941575.1|DC941575
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCNANACCGGAAAA                         TACTACATGATCAACTTANCCGCTCCGTTCATCTGCCANTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208394555|gb|DC953594.1|DC953594
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208374223|gb|DC945269.1|DC945269
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208356999|gb|DC930029.1|DC930029
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTANCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|162184644|gb|FC360842.1|FC360842
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGANAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208379780|gb|DC911665.1|DC911665
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|67720670|gb|BJ970929.1|BJ970929
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|67718979|gb|BJ969238.1|BJ969238
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|162184643|gb|FC360841.1|FC360841
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208395695|gb|DC911816.1|DC911816
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCT
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCT
EST: gi|100383558|gb|BY950342.1|BY950342
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATNCA-CTTAGCCGCTCCGGTCATCTGCCAGTTCTTTAAGGA
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGAT-CAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGA
EST: gi|208353070|gb|DC926093.1|DC926093
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208368488|gb|DC947889.1|DC947889
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208369247|gb|DC944564.1|DC944564
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208398364|gb|DC912321.1|DC912321
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208395850|gb|DC924260.1|DC924260
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATNTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208358332|gb|DC930717.1|DC930717
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|37841119|gb|BJ599127.1|BJ599127
EST:     CACCGGAATNTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|162160598|gb|FC337173.1|FC337173
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGANAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|67727318|gb|BJ977577.1|BJ977577
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208356504|gb|DC914338.1|DC914338
EST:     CACNGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGAT
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGAT
EST: gi|208353472|gb|DC938707.1|DC938707
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208347297|gb|DC925321.1|DC925321
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|162175918|gb|FC351596.1|FC351596
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208394056|gb|DC957137.1|DC957137
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208399501|gb|DC908498.1|DC908498
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208346565|gb|DC916831.1|DC916831
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|18340220|gb|BJ172248.1|BJ172248
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208355282|gb|DC929771.1|DC929771
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCNAGTTCTTAAAG-AC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208367374|gb|DC951292.1|DC951292
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|100388054|gb|BY988527.1|BY988527
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208390491|gb|DC933748.1|DC933748
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCT
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCT
EST: gi|208356213|gb|DC957331.1|DC957331
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAANTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|37845825|gb|BJ603833.1|BJ603833
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208374190|gb|DC945236.1|DC945236
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208383873|gb|DC911527.1|DC911527
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC
EST: gi|208370618|gb|DC936134.1|DC936134
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTT
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTT
EST: gi|100370755|gb|BY948500.1|BY948500
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATNCA-CTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGG
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGAT-CAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGG-
EST: gi|208358299|gb|DC939411.1|DC939411
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCC
EST: gi|100379883|gb|BY949992.1|BY949992
EST:     ACCGGAATCTATGATGACCCGTGGCCAA-CATGCTGCCGAGACCGGAAA-                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTTCTTTA-GGA
genomic: ACCGGAATCTATGATGACC-GTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTT-CTTTAAGGA
EST: gi|208394240|gb|DC933908.1|DC933908
EST:     CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAA                         TACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTT-AANGAC
genomic: CACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 31 (downstream exon)
Score: 9

TGGAGAAGGCAAAGTACATCTACAGCGCCGGTTTCTTCCTGACTGTTTCACCGGAATCTATGATGACCGTGGCCAAACATGCTGCCGAGACCGGAAAAgttagttttg ... gtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggcatttaaggctgcactaattgtcgaatttctcctctgcttgtgtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC
               cactaat  putative branch site (score: 9)
                actaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagttttgtattgttttcaagtagttaaattgcacaatacttcgctgtcccaaatgtcattcagatgtttgagatgttgaactcaggtatctgtttaatggcatttaaggctgcactaattgtcgaatttctcctctgcttgtgtttgcgcagTACTACATGATCAACTTAGCCGCTCCGTTCATCTGCCAGTTCTTTAAGGACCCTCTTATGGAGCTTTTCCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT