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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaaattttgtaggttactcatgattgtatatccttgagcattgcaacaatttttctgtcgtattcttgaaagtgcaagttaccacttgtttcgctgcagAATTATCCGGGACATCATTCAGAATCATCTTGTACAG

Basic information

species Physcomitrella patens
transcript PP1S73_244V6.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100389659|gb|BY952465.1|BY952465
EST:     AAGGAGGACTTTGGAACTGAAGGACGAGGCGGCTACTTCGACGAATACGG                         AATTATCCGGGACATCATTCAGAATCATCTTGTACAG
genomic: AAGGAGGACTTTGGAACTGAAGGACGAGGCGGCTACTTCGACGAATACGGgtaggtcact ... ttcgctgcagAATTATCCGGGACATCATTCAGAATCATCTTGTACAG
EST: gi|100389158|gb|BY952362.1|BY952362
EST:     AAGGAGGACTTTGGAACTGAAGGACGAGGCGGCTACTTCGACGAATACGG                         AATTATCCGGGACATCATTCAGAATCATCTTGTACAG
genomic: AAGGAGGACTTTGGAACTGAAGGACGAGGCGGCTACTTCGACGAATACGGgtaggtcact ... ttcgctgcagAATTATCCGGGACATCATTCAGAATCATCTTGTACAG
EST: gi|208398370|gb|DC912327.1|DC912327
EST:     AAGGAGGACTTTGGAACTGAAGGACGAGGCGGCTACTTCGACGAATACGG                         AATTATCCGGGACATCATTCAGAATCATCTTGTACAG
genomic: AAGGAGGACTTTGGAACTGAAGGACGAGGCGGCTACTTCGACGAATACGGgtaggtcact ... ttcgctgcagAATTATCCGGGACATCATTCAGAATCATCTTGTACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaatttttctgtcgtattcttgaaagtgcaagttaccacttgtttcgctgcagAATTATCCGGGACATCATTCAGAATCATCTTGTACAG
                                        cttgtttc  CT-rich tract
     tttttct  TA-rich tract