1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gtctgggaaatcgcaatccatagtatttctgtacttggccagacaacggtactgggttgttgagttttgaccgctgagcatcgtctgttttttgtggcagTGTATCCAAGGTCTTCCTGAAAGTGGATTGAGGCGTATTATACTTACGGCGTCCGGAGGTGCATTCAG
species | Physcomitrella patens |
transcript | PP1S73_243V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTCGGCCATCTTTCAG TGTATCCAAGGTCTTCCTGAAAGTGGATTGAGGCGTATTATACTTACGGCGEST: gi|162155914|gb|FC332463.1|FC332463
genomic: CTCGGCCATCTTTCAGgtttttccca ... tttgtggcagTGTATCCAAGGTCTTCCTGAAAGTGGATTGAGGCGTATTATACTTACGGCG
EST: ATGGCATTAAAATCTTGCCAGCTGATTCTGAGCACTCGGCCATCTTTCAG TGTATCCAAGGTCTTCCTGAAAGTGGATTGAGGCGTATTATACTTACGGCGEST: gi|162171164|gb|FC347778.1|FC347778
genomic: ATGGCATTAAAATCTTGCCAGCTGATTCTGAGCACTCGGCCATCTTTCAGgtttttccca ... tttgtggcagTGTATCCAAGGTCTTCCTGAAAGTGGATTGAGGCGTATTATACTTACGGCG
EST: ATGGCATTAAAATCTTGCCAGCTGATTCTGAGCACTCGGCCATCTTTCAG TGTATCCAAGGTCTTCCTGAAAGTGGATTGAGGCGTATTATACTTACGGCGEST: gi|19780903|gb|BQ039624.1|BQ039624
genomic: ATGGCATTAAAATCTTGCCAGCTGATTCTGAGCACTCGGCCATCTTTCAGgtttttccca ... tttgtggcagTGTATCCAAGGTCTTCCTGAAAGTGGATTGAGGCGTATTATACTTACGGCG
EST: ATGGCATTAAAATCTTGCCAGCTGATTCTGAGCACTCGGCCATCTTTCAG TGTATCCAAGGTCTTCCTGAAAGTGGATTGAGGCGTATTATACTTACGGCG
genomic: ATGGCATTAAAATCTTGCCAGCTGATTCTGAGCACTCGGCCATCTTTCAGgtttttccca ... tttgtggcagTGTATCCAAGGTCTTCCTGAAAGTGGATTGAGGCGTATTATACTTACGGCG
acggtactgggttgttgagttttgaccgctgagcatcgtctgttttttgtggcagTGTATCCAAGGTCTTCCTGAAAGTGGATTGAGGCGTATTATACTTACGGCGTCCGGAGGTGCATTCAG
ttttgac putative branch site (score: 17)
tctgtttttt putative PPT
tgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgggaaatcgcaatccatagtatttctgtacttggccagacaacggtactgggttgttgagttttgaccgctgagcatcgtctgttttttgtggcagTGTATCCAAGGTCTTCCTGAAAGTGGATTGAGGCGTATTATACTTACGGCGTCCGGAGGTGCATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA