1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatggactcttcaaattttgattaaagtctggttaagtgtggcaccgtaaaattgcatttttagcttattatgtaaggttatcgaagaattgcagtaactgcagattattcttcatactgattcttacactctgtgcagATTGACTGTGATGGCATTAGAGCGATTGGTTCATTTGGAGCCTAGAAACTGGGCTTTACGGAAAGAATATGGCATGGTTTTATATCACAGCCG
species | Physcomitrella patens |
transcript | PP1S70_166V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AACAACGCAGGGCTTCCAGTTGGAGCTATGCTTCGACCTGAGGATCTTAG ATTGACTGTGATGGCATTAGAGCGATTGGTTCATTTGGAGCCTAGAAACTGEST: gi|37835428|gb|BJ593440.1|BJ593440
genomic: AACAACGCAGGGCTTCCAGTTGGAGCTATGCTTCGACCTGAGGATCTTAGgtaatggact ... ctctgtgcagATTGACTGTGATGGCATTAGAGCGATTGGTTCATTTGGAGCCTAGAAACTG
EST: AACAACGCAGGGCTTCCAGTTGGAGCTATGCTTCGACCTGAGGATCTTAG ATTGACTGTGATGGCATTAGAGCGATTGGTTCATTTGGAGCCTAGAAACTGEST: gi|18335672|gb|BJ167692.1|BJ167692
genomic: AACAACGCAGGGCTTCCAGTTGGAGCTATGCTTCGACCTGAGGATCTTAGgtaatggact ... ctctgtgcagATTGACTGTGATGGCATTAGAGCGATTGGTTCATTTGGAGCCTAGAAACTG
EST: AACAACGCAGGGCTTCCAGTTGGAGCTATGCTTCGACCTGAGGATCTTAG ATTGACTGTGATGGCATTAGAGCGATTGGTTCATTTGGAGCCTAGAAACTGEST: gi|37831367|gb|BJ589379.1|BJ589379
genomic: AACAACGCAGGGCTTCCAGTTGGAGCTATGCTTCGACCTGAGGATCTTAGgtaatggact ... ctctgtgcagATTGACTGTGATGGCATTAGAGCGATTGGTTCATTTGGAGCCTAGAAACTG
EST: TGGAGCTATGCTTCGACCTGAGGATCTTAG ATTGACTGTGATGGCATTAGAGCGATTGGTTCATTTGGAGCCTAGAAACTGEST: gi|208362779|gb|DC950579.1|DC950579
genomic: TGGAGCTATGCTTCGACCTGAGGATCTTAGgtaatggact ... ctctgtgcagATTGACTGTGATGGCATTAGAGCGATTGGTTCATTTGGAGCCTAGAAACTG
EST: AACAACGCAGGGCTTCCAGCTGGAGCTATGCTTCGACCTGAGGATCTTAG ATTGACTGTGATGGCATTAGAGCGATTGGTTCATTTGGAGCCTAGAAACTG
genomic: AACAACGCAGGGCTTCCAGTTGGAGCTATGCTTCGACCTGAGGATCTTAGgtaatggact ... ctctgtgcagATTGACTGTGATGGCATTAGAGCGATTGGTTCATTTGGAGCCTAGAAACTG
aagaattgcagtaactgcagattattcttcatactgattcttacactctgtgcagATTGACTGTGATGGCATTAGAGCGATTGGTTCATTTGGAGCCTAGAAACTGGGCTTTACGGAAAGAATATGGCATGGTTTTATATCACAGCCG
ttcttac putative branch site (score: 21)
attattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatggactcttcaaattttgattaaagtctggttaagtgtggcaccgtaaaattgcatttttagcttattatgtaaggttatcgaagaattgcagtaactgcagattattcttcatactgattcttacactctgtgcagATTGACTGTGATGGCATTAGAGCGATTGGTTCATTTGGAGCCTAGAAACTGGGCTTTACGGAAAGAATATGGCATGGTTTTATATCACAGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA