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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgacgatccaacgcaacgtaacatgtgaatctgcttctgcgacatgaatcgctggtaaattattcaactctgaaaaattattcgctttgagtgaatgctacaatcagattgacttgtgtttgtgctggttactcggttgcagATCGAGATGTACCTTACGCAAAGGCGCGCACAACATTTGTACGCGACGTGCAGTTGGCCAGAAATGTGTTGCAAAACCACTTCAGTAGACCTGCCCCTGC

Basic information

species Physcomitrella patens
transcript PP1S6_364V6.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37821815|gb|BJ579881.1|BJ579881
EST:     CATATTTTGCTGGAAGAGAAAAATCGCCATTACGCGACCTCACCGACATC                         ATCGAGATGTACCTTACGCAAAGGCGCGCACAACATTTGTACGCGACGTGC
genomic: CATATTTTGCTGGAAGAGAAAAATCGCCATTACGCGACCTCACCGACATCgtaagtgacg ... tcggttgcagATCGAGATGTACCTTACGCAAAGGCGCGCACAACATTTGTACGCGACGTGC
EST: gi|37833758|gb|BJ591770.1|BJ591770
EST:     CATATTTTGCTGGAAGAGAAAAATCGCCATTACGCGACCTCACCGACATC                         ATCGAGATGTACCTTACGCAAAGGCGCGCACAACATTTGTACGCGACGTGC
genomic: CATATTTTGCTGGAAGAGAAAAATCGCCATTACGCGACCTCACCGACATCgtaagtgacg ... tcggttgcagATCGAGATGTACCTTACGCAAAGGCGCGCACAACATTTGTACGCGACGTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagtgaatgctacaatcagattgacttgtgtttgtgctggttactcggttgcagATCGAGATGTACCTTACGCAAAGGCGCGCACAACATTTGTACGCGACGTGCAGTTGGCCAGAAATGTGTTGCAAAACCACTTCAGTAGACCTGCCCCTGC
                   gattgac  putative branch site (score: 3)