1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcaacttgtcaagtttttgttgttctgaggctggagtgttgaagagacattctctgcgcctcatcatcatgccttaaccacgtgctgtattttgttacagCCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTTGAAGACTGTGTTTCTCTTTGAGTTTCCTTTGTACAACAAAACAAAGCCG
species | Physcomitrella patens |
transcript | PP1S69_206V6.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGCATGGAAGCAATCCAGAGTTTCGGGCTTATAAGCATAGAACGAG CCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTTEST: gi|208374653|gb|DC948639.1|DC948639
genomic: AAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAGCATAGAACGAGgtactgttcg ... tttgttacagCCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTT
EST: AAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAGCATAGAACGAG CCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTTEST: gi|162277932|gb|FC454063.1|FC454063
genomic: AAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAGCATAGAACGAGgtactgttcg ... tttgttacagCCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTT
EST: AAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAGCATAGAACGAG CCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTTEST: gi|208361108|gb|DC946713.1|DC946713
genomic: AAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAGCATAGAACGAGgtactgttcg ... tttgttacagCCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTT
EST: AAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAGCATAGAACGAG CCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTTEST: gi|208372267|gb|DC948070.1|DC948070
genomic: AAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAGCATAGAACGAGgtactgttcg ... tttgttacagCCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTT
EST: AAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAGCATAGAACGAG CCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTTEST: gi|208364468|gb|DC958037.1|DC958037
genomic: AAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAGCATAGAACGAGgtactgttcg ... tttgttacagCCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTT
EST: AAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAGCATAGAACGAG CCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTTEST: gi|208374045|gb|DC948914.1|DC948914
genomic: AAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAGCATAGAACGAGgtactgttcg ... tttgttacagCCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTT
EST: AAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAGCATAGAACGAG CCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTTEST: gi|208365275|gb|DC946820.1|DC946820
genomic: AAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAGCATAGAACGAGgtactgttcg ... tttgttacagCCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTT
EST: AAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAGCATAGAACGAG CCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTTEST: gi|208373125|gb|DC948890.1|DC948890
genomic: AAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAGCATAGAACGAGgtactgttcg ... tttgttacagCCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTT
EST: AAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAGCATAGAACGAG CCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTT
genomic: AAGAAGCATGGAAGCAATCCAGAGTATCGGGCTTATAAGCATAGAACGAGgtactgttcg ... tttgttacagCCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTT
gacattctctgcgcctcatcatcatgccttaaccacgtgctgtattttgttacagCCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTTGAAGACTGTGTTTCTCTTTGAGTTTCCTTTGTACAACAAAACAAAGCCG
ccttaac putative branch site (score: 3)
ttttgtt putative PPT
tattttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaacttgtcaagtttttgttgttctgaggctggagtgttgaagagacattctctgcgcctcatcatcatgccttaaccacgtgctgtattttgttacagCCCTCTCATTCCACTTCCACCTACTCTTTATGGTAGCCTTTCGAAGACGTTGAAGACTGTGTTTCTCTTTGAGTTTCCTTTGTACAACAAAACAAAGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA