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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgttcttatctggaattgtattttcttatcccctgctgtaatccttttgagtcatgtgcattgagctgagctaagggattggtgtgatggtttctggagGATACAGATCTTTCTGCAGCAACAGCAGGACCAAGTGGGGGGCTTGCAGCATAGCCTAGAGAATGTCTCTCAAGTGGCG

Basic information

species Physcomitrella patens
transcript PP1S69_103V6.3
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37823403|gb|BJ581469.1|BJ581469
EST:     TTCCAATGACTGCTGGGGGGCAGCAGCAGCTAATGTTGCATCCACAGCAA                         GATACAGATCTTTCTGCAGCAACAGCAGGACCAAGTGGGGGGCTTGCAGCA
genomic: TTCCAATGACTGCTGGGGGGCAGCAGCAGCTAATGTTGCATCCACAGCAAgtaagcacat ... gtttctggagGATACAGATCTTTCTGCAGCAACAGCAGGACCAAGTGGGGGGCTTGCAGCA
EST: gi|162193633|gb|FC371238.1|FC371238
EST:     TTCCAATGACTGCTGGGGGGCAGCAGCAGCTAATGTTGCATCCACAGCAA                         -AT-C---T-TT-CTGCAGCAACAGCAGGACCAAGTGGGGGGCTTGCAGCA
genomic: TTCCAATGACTGCTGGGGGGCAGCAGCAGCTAATGTTGCATCCACAGCAAgtaagcacat ... gtttctggagGATACAGATCTTTCTGCAGCAACAGCAGGACCAAGTGGGGGGCTTGCAGCA
EST: gi|162273741|gb|FC449464.1|FC449464
EST:     TTCCAATGACTGCTGGGGGGCAGCAGCAGCTAATGTTGCATCCACAGCAA                         GATACAGATCTTTCTGCAGCAACAGCAGGACCAAGTGGGGGGCTTGCAGCA
genomic: TTCCAATGACTGCTGGGGGGCAGCAGCAGCTAATGTTGCATCCACAGCAAgtaagcacat ... gtttctggagGATACAGATCTTTCTGCAGCAACAGCAGGACCAAGTGGGGGGCTTGCAGCA
EST: gi|162181522|gb|FC358136.1|FC358136
EST:     TTCCAATGACTGCTGGGGGGCAGCAGCAGCTAATGTTGCATCCACAGCAA                         GATACAGATCTTTCTGCAGCAACAGCAGGACCAAGTGGGGGGCTTGCAGCA
genomic: TTCCAATGACTGCTGGGGGGCAGCAGCAGCTAATGTTGCATCCACAGCAAgtaagcacat ... gtttctggagGATACAGATCTTTCTGCAGCAACAGCAGGACCAAGTGGGGGGCTTGCAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgagtcatgtgcattgagctgagctaagggattggtgtgatggtttctggagGATACAGATCTTTCTGCAGCAACAGCAGGACCAAGTGGGGGGCTTGCAGCATAGCCTAGAGAATGTCTCTCAAGTGGCG
                                              tttct  CT-rich tract