1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttgtgttcaggcctatgggcaaaccagaaggtttttattttagtgcatgtaaagtcaaagttgcagtatagatgttgtcataaccttgcagctgtactgaatgactcgttgactcaatggtaagagatgttcaattgcccgtagacttttctcaccggtacattgttggtcccatcagAAATAACAGGAAACCTTGGTCGAAATTTATCAATGCTGATAATCAGCACTTGGTTGTACCAGAG
species | Physcomitrella patens |
transcript | PP1S63_208V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AACAAATACCGACTGGAACTAGATCCCCATCTCGAAGCGTTGGTTGGCAG AAATAACAGGAAACCTTGGTCGAAATTTATCAATGCTGATAATCAGCACTTEST: gi|37846446|gb|BJ604454.1|BJ604454
genomic: AACAAATACCGACTGGAACTAGATCCCCATCTCGAAGCGTTGGTTGGCAGgtttgtgttc ... gtcccatcagAAATAACAGGAAACCTTGGTCGAAATTTATCAATGCTGATAATCAGCACTT
EST: AACAAATACCGACTGGAACTAGATCCCCATCTCGAAGCGTTGGTTGGCAG AAATAACAGGAAACCTTGGTCGAAATTTATCAATGCTGATAATCAGCACTTEST: gi|162151401|gb|FC327530.1|FC327530
genomic: AACAAATACCGACTGGAACTAGATCCCCATCTCGAAGCGTTGGTTGGCAGgtttgtgttc ... gtcccatcagAAATAACAGGAAACCTTGGTCGAAATTTATCAATGCTGATAATCAGCACTT
EST: AACAAATACCGACTGGAACTAGATCCCCATCTCGAAGCGTTGGTTGGCAG AAATAACAGGAAACCTTGGTCGAAATTTATCAATGCTGATAATCAGCACTT
genomic: AACAAATACCGACTGGAACTAGATCCCCATCTCGAAGCGTTGGTTGGCAGgtttgtgttc ... gtcccatcagAAATAACAGGAAACCTTGGTCGAAATTTATCAATGCTGATAATCAGCACTT
gagatgttcaattgcccgtagacttttctcaccggtacattgttggtcccatcagAAATAACAGGAAACCTTGGTCGAAATTTATCAATGCTGATAATCAGCACTTGGTTGTACCAGAG
ttctcac putative branch site (score: 3)
tcccatc putative PPT
ttcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgttcaggcctatgggcaaaccagaaggtttttattttagtgcatgtaaagtcaaagttgcagtatagatgttgtcataaccttgcagctgtactgaatgactcgttgactcaatggtaagagatgttcaattgcccgtagacttttctcaccggtacattgttggtcccatcagAAATAACAGGAAACCTTGGTCGAAATTTATCAATGCTGATAATCAGCACTTGGTTGTACCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT