1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttggattcgaatcttcatctgcccatgcctcgactacgagctaaatgcacagcacacccttctgtctgtggagcaataggagttttcagaaagtaatctctggtatcagatgttaacaaatttgttcgggaaatttgcagGCTGTAATTGATGCCAACATTATTCCACCTCTGGTATCCCTGCTTGCGTCAGCTGAATTCGACATCAAGAAAGAGGCAGCCTGGGCGGTGTCCAATGCAA
species | Physcomitrella patens |
transcript | PP1S63_171V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CATGCTGGACCATTTCCAACATCACAGCCGGAAACAAGGAACAAATTCAG GCTGTAATTGATGCCAACATTATTCCACCTCTGGTATCCCTGCTTGCGTCAEST: gi|162267819|gb|FC444420.1|FC444420
genomic: CATGCTGGACCATTTCCAACATCACAGCCGGAAACAAGGAACAAATTCAGgttggattcg ... aaatttgcagGCTGTAATTGATGCCAACATTATTCCACCTCTGGTATCCCTGCTTGCGTCA
EST: CATGCTGGACCATTTCCAACATCACAGCCGGAAACAAGGAACAAATTCAG GCTGTAATTGATGCCAACATTATTCCACCTCTGGTATCCCTGCTTGCGTCA
genomic: CATGCTGGACCATTTCCAACATCACAGCCGGAAACAAGGAACAAATTCAGgttggattcg ... aaatttgcagGCTGTAATTGATGCCAACATTATTCCACCTCTGGTATCCCTGCTTGCGTCA
tcagaaagtaatctctggtatcagatgttaacaaatttgttcgggaaatttgcagGCTGTAATTGATGCCAACATTATTCCACCTCTGGTATCCCTGCTTGCGTCAGCTGAATTCGACATCAAGAAAGAGGCAGCCTGGGCGGTGTCCAATGCAA
tgttaac putative branch site (score: 2)
atgttaacaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggattcgaatcttcatctgcccatgcctcgactacgagctaaatgcacagcacacccttctgtctgtggagcaataggagttttcagaaagtaatctctggtatcagatgttaacaaatttgttcgggaaatttgcagGCTGTAATTGATGCCAACATTATTCCACCTCTGGTATCCCTGCTTGCGTCAGCTGAATTCGACATCAAGAAAGAGGCAGCCTGGGCGGTGTCCAATGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG