1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgtcctcgtttgagtaagacggtgtcatatacattttgagacgagtgttttacttcaaagtcgcgctattgtggtctaacatgaatgtggtgggctgcagCGATCTGGGATTAAAGCCCCAAGGCCAGTTGAAGGTCACCGTTGTGAAGGCTGAAAATTTGAAGAACCAAGAGGCTATTGGAAAGTCGGATCCTTACGTT
species | Physcomitrella patens |
transcript | PP1S62_94V6.5 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTCACAGAATTGTACTTCCTGTTGGAGACACTCCTGCGAACGTTATAAG CGATCTGGGATTAAAGCCCCAAGGCCAGTTGAAGGTCACCGTTGTGAAGGCEST: gi|162172367|gb|FC348308.1|FC348308
genomic: CCTCACAGAATTGTACTTCCTGTTGGAGACACTCCTGCGAACGTTATAAGgtggtcttct ... tgggctgcagCGATCTGGGATTAAAGCCCCAAGGCCAGTTGAAGGTCACCGTTGTGAAGGC
EST: CCTCACAGAATTGTACTTCCTGTTGGAGACACTCCTGCGAACGTTATAAG CGATCTGGGATTAAAGCCCCAAGGCCAGTTGAAGGTCACCGTTGTGAAGGCEST: gi|162251728|gb|FC427460.1|FC427460
genomic: CCTCACAGAATTGTACTTCCTGTTGGAGACACTCCTGCGAACGTTATAAGgtggtcttct ... tgggctgcagCGATCTGGGATTAAAGCCCCAAGGCCAGTTGAAGGTCACCGTTGTGAAGGC
EST: CCTCACAGAATTGTACTTCCTGTTGGAGACACTCCTGCGAACGTTATAAG CGATCTGGGATTAAAGCCCCAAGGCCAGTTGAAGGTCACCGTTGTGAAGGCEST: gi|162251336|gb|FC427978.1|FC427978
genomic: CCTCACAGAATTGTACTTCCTGTTGGAGACACTCCTGCGAACGTTATAAGgtggtcttct ... tgggctgcagCGATCTGGGATTAAAGCCCCAAGGCCAGTTGAAGGTCACCGTTGTGAAGGC
EST: CCTCACAGAATTGTACTTCCTGTTGGAGACACTCCTGCGAACGTTATAAG CGATCTGGGATTAAAGCCCCAAGGCCAGTTGAAGGTCACCGTTGTGAAGGCEST: gi|100367410|gb|BY984691.1|BY984691
genomic: CCTCACAGAATTGTACTTCCTGTTGGAGACACTCCTGCGAACGTTATAAGgtggtcttct ... tgggctgcagCGATCTGGGATTAAAGCCCCAAGGCCAGTTGAAGGTCACCGTTGTGAAGGC
EST: CCTCACAGAATTGTACTTCCTGTTGGAGACACTCCTGCGAACGTTATAAG CGATCTGGGATTAAAGCCCCAAGGCCAGTTGAAGGTCACCGTTGTGAAGGCEST: gi|162251335|gb|FC427977.1|FC427977
genomic: CCTCACAGAATTGTACTTCCTGTTGGAGACACTCCTGCGAACGTTATAAGgtggtcttct ... tgggctgcagCGATCTGGGATTAAAGCCCCAAGGCCAGTTGAAGGTCACCGTTGTGAAGGC
EST: TGCGAACGTTATAAG CGATCTGGGATTAAAGCCCCAAGGCCAGTTGAAGGTCACCGTTGTGAAGGCEST: gi|162268968|gb|FC445460.1|FC445460
genomic: TGCGAACGTTATAAGgtggtcttct ... tgggctgcagCGATCTGGGATTAAAGCCCCAAGGCCAGTTGAAGGTCACCGTTGTGAAGGC
EST: CCTCACAGAATTGTACTTCCTGTTGGAGACACTCCTGCGAACGTTATAAG CGATCTGGGATTAAAGCCCCAAGGCCAGTTGAAGGTCACCGTTGTGAAGGCEST: gi|162153177|gb|FC329583.1|FC329583
genomic: CCTCACAGAATTGTACTTCCTGTTGGAGACACTCCTGCGAACGTTATAAGgtggtcttct ... tgggctgcagCGATCTGGGATTAAAGCCCCAAGGCCAGTTGAAGGTCACCGTTGTGAAGGC
EST: CCTCACAGAATTGTACTTCCTGTTGGAGACACTCCTGCGAACGTTATAAG CGATCTGGGATTAAAGCCCCAAGGCCAGTTGAAGGTCACCGTTGTGAAGGC
genomic: CCTCACAGAATTGTACTTCCTGTTGGAGACACTCCTGCGAACGTTATAAGgtggtcttct ... tgggctgcagCGATCTGGGATTAAAGCCCCAAGGCCAGTTGAAGGTCACCGTTGTGAAGGC
tgttttacttcaaagtcgcgctattgtggtctaacatgaatgtggtgggctgcagCGATCTGGGATTAAAGCCCCAAGGCCAGTTGAAGGTCACCGTTGTGAAGGCTGAAAATTTGAAGAACCAAGAGGCTATTGGAAAGTCGGATCCTTACGTT
gtctaac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcctcgtttgagtaagacggtgtcatatacattttgagacgagtgttttacttcaaagtcgcgctattgtggtctaacatgaatgtggtgggctgcagCGATCTGGGATTAAAGCCCCAAGGCCAGTTGAAGGTCACCGTTGTGAAGGCTGAAAATTTGAAGAACCAAGAGGCTATTGGAAAGTCGGATCCTTACGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG